Molecular Target Synopsis
Overview
Domains and Structures
Drugs and Clinical Candidates
Druggability
Chemistry
Ligand Efficiency Plot
Pathways
Family Cladogram
Interaction Network
Gene Expression
Gene Copy Number Variation
RNAi
Mutations
Germline Genetics

ABCA6 (Q8N139) - Overview - Molecular Target Synopsis

Protein


ABCA6, ATP-binding cassette sub-family A member 6
UniProt Q8N139

Also Known as ABCA6_HUMAN, ABCA6

Probable transporter which may play a role in macrophage lipid homeostasis.

Isoforms / Transcripts (Protein Coding)


Protein Length Ensembl Gene Ensembl Transcript Ensembl Protein Uniprot Isoform
1617ENSG00000154262ENST00000284425ENSP00000284425Q8N139-1
637Q8N139-2
185ENSG00000154262ENST00000590645ENSP00000466862Q8N139-3

Sub-cellular localization


UniProt: ABCA6 is active in the following subcellular-locations: membrane.
GO terms: ABCA6 is active in the following subcellular-locations: integral component of membrane, intracellular membrane-bounded organelle, nucleoplasm.



UniProt
GO terms

Gene Copy Number Variation


In COSMIC - Cell Lines Project ABCA6 has gain in 5 cell-lines, loss in 0 cell-lines and no signal in 1000 cell-lines. (see details)

Gene Expression


In NCI60, the highest expressing cell lines are: MCF7, SK_OV_3, HL_60

In Array Express (RNA-seq of 675 commonly used human cancer cell lines), the highest expressing cell lines are: OCI-LY-10, TMD8, RI-1

In Array Express (RNA-seq of long poly adenylated RNA and long non poly adenylated RNA from ENCODE cell lines), the highest expressing cell lines are: GM12878, hMSC-AT, SK-N-SH

(see details)

3D Structures


At greater than 35% identity similarity to ABCA6 there are:
4 structures (6 chains) solved
4 are solved in complex with at least one small molecule ligand



(see details)
Molecular Target 3D Synopsis

Screening and Chemistry


ABCA6 has been screened with compounds ( bioactivities). (see details)