Cell Line Synopsis
Cell Line Overview
Mutations
Copy Number Variation
Gene Expression
RNAi
Compound Sensitivity Profile
Similar Cell Lines

NCI-H28 - Copy Number Variation - Cell Line Synopsis

External Data Sources:COSMIC - Cell Lines Project
Genome Average Copy Number: 3.8

Regions

Chromosome Genome Start Genome Stop Copy Number Signal
Y23653348237656509gain
Y8838496889643113gain
1727689377281114913gain
Y215431232157138410gain
Y837557684981579gain
115255570715258623910gain
Y6107902637474614gain
Y9525915966823814gain
Y14751384147935259gain
Y196181892065256614gain
Y245730522776976914gain

Genes

Ensembl Gene Gene Name(s) Copy Number Signal Chromosome Start Stop Strand
ENSG00000234131TCEB1P814gainY2466338924663720-1
ENSG00000226906TTTY414gainY25082602251194311
ENSG0000024400014gainY25163210251639681
ENSG00000225466OFD1P10Y14gainY25727742257607871
ENSG00000223407USP9YP1814gainY2580561325813969-1
ENSG00000251917RNU1-86P14gainY2609276526092918-1
ENSG00000244231CSPG4P2Y14gainY2632958126333378-1
ENSG00000224827LINC00265-2P14gainY26422392264231731
ENSG00000233740CICP214gainY2642448426427287-1
ENSG00000236379ZNF736P4Y14gainY27314746273159881
ENSG00000229709USP9YP3614gainY27725937277345911
ENSG00000229643LINC0028014gainY62252606229454-1
ENSG0000023589514gainY63610176364798-1
ENSG0000023002513gainY88397928842136-1
ENSG00000233864TTTY159gainY14774265148041621
ENSG00000226116USP9YP614gainY2002457920033510-1
ENSG00000233378USP9YP3414gainY20096229201051401
ENSG00000226611OFD1P2Y14gainY2024256720258088-1
ENSG00000252166RNU1-95P14gainY20278734202788931
ENSG00000232899CDY9P14gainY2034472120346300-1
ENSG00000252209RNU1-48P14gainY20648397206485581
ENSG00000242875RBMY1B9gainY23673224236876721
ENSG00000234414RBMY1A19gainY23673258237112121
ENSG000002282579gainY2369372523695897-1
ENSG00000169789PRY14gainY24636544246607841
ENSG00000215537ZNF736P11Y14gainY2501269125013903-1
ENSG00000188120DAZ114gainY2527550225345241-1
ENSG00000205936PPP1R12BP214gainY25525631255388441
ENSG00000236620XKRYP314gainY2586206925872955-1
ENSG00000231540TCEB1P914gainY2595496825955206-1
ENSG00000172352CDY1B14gainY2619137626194166-1
ENSG00000248792LINC00266-2P14gainY26424828264374931
ENSG00000232003ZNF736P12Y14gainY2664641026647652-1
ENSG00000187191DAZ314gainY2690921626959626-1
ENSG00000228296TTTY4C14gainY2720923027246039-1
ENSG00000239304DNM1P4814gainY27632787276334691
ENSG00000197092GOLGA6L16P14gainY2764179827648105-1
ENSG00000172288CDY114gainY27768264277710491
ENSG0000024287914gainY617575161776281
ENSG00000147753TTTY714gainY631750963259471
ENSG00000147761TTTY7B14gainY95444339552871-1
ENSG00000228890TTTY2114gainY95552629558905-1
ENSG0000025203814gainY1973494119735035-1
ENSG00000129873CDY2B14gainY1998929019992100-1
ENSG0000022589614gainY19838632198389601
ENSG00000237616USP9YP3214gainY2010708120109132-1
ENSG00000233522FAM224A14gainY20488139205150961
ENSG00000229406OFD1P4Y14gainY2061503620634023-1
ENSG000002279899gainY2371773823719956-1
ENSG00000184991TTTY139gainY2374548623756552-1
ENSG00000228240TTTY17A14gainY24997731249988621
ENSG00000224873CDY13P14gainY2466682824667842-1
ENSG00000224866USP9YP2514gainY25880340258823961
ENSG00000223362CDY15P14gainY2600166926003238-1
ENSG00000232585OFD1P12Y14gainY26118927261412281
ENSG00000223641TTTY17C14gainY2732979027330920-1
ENSG00000233944LINC00265-3P14gainY2753930127540203-1
ENSG00000237823CDY19P14gainY2771026927712180-1
ENSG00000168757TSPY214gainY611426461170601
ENSG00000234583TSPY19P14gainY61719986173115-1
ENSG0000022837914gainY965092496551221
ENSG00000252012RNA5SP52114gainY19671654196717691
ENSG00000225740TCEB1P614gainY1994908119949408-1
ENSG00000225895TRAPPC2P814gainY20267200202699881
ENSG00000233120USP9YP1514gainY20278413202795811
ENSG0000024464614gainY20290496202989131
ENSG00000229465ACTG1P1114gainY20309770203108941
ENSG00000249726TUBB1P114gainY20548860205510371
ENSG00000205944DAZ214gainY25365594254375031
ENSG0000025192514gainY2556924625569383-1
ENSG0000023007314gainY25669468256715161
ENSG0000023664714gainY25695956256975321
ENSG0000026793514gainY25847479258505921
ENSG00000232424USP9YP2914gainY2588640525892840-1
ENSG00000252681RNU1-97P14gainY2588708925887252-1
ENSG00000231026XKRYP414gainY2606338826063870-1
ENSG00000227871USP9YP1214gainY2609207426098440-1
ENSG00000231375CDY17P14gainY2619602526197634-1
ENSG00000232205CDY18P14gainY26250254262521651
ENSG0000023598114gainY26288505263039901
ENSG00000242854DNM1P2414gainY2632546326329652-1
ENSG00000242425RN7SL818P14gainY2635710726357382-1
ENSG00000235412TTTY4B14gainY26716349267531721
ENSG00000225491UBE2Q2P4Y14gainY2637897326385131-1
ENSG00000183795BPY2B14gainY26753707267853541
ENSG00000233652CICP114gainY27535139275379581
ENSG00000223636UBE2Q2P5Y14gainY27577303275834621
ENSG00000172297GOLGA2P3Y14gainY27600708276067191
ENSG0000027204214gainY27605054276053291
ENSG00000172294CSPG4P4Y14gainY27624416276328521
ENSG00000212855TTTY214gainY957819395960851
ENSG00000238191CLUHP114gainY1973313919737712-1
ENSG00000224166PRYP114gainY1984140819856476-1
ENSG00000226353TAF9P114gainY19740393197412821
ENSG00000252513RNU1-128P14gainY1990088319901042-1
ENSG00000226011OFD1P1Y14gainY19921687199372091
ENSG00000237558CDY7P14gainY20063469200653801
ENSG00000228945CLUHP214gainY20442064204466471
ENSG00000252667RNA5SP52314gainY2050992120510033-1
ENSG00000226362FAM41AY214gainY2055288020566932-1
ENSG00000227494USP9YP1414gainY20642973206492861
ENSG00000169811RBMY1HP9gainY23655405236638541
ENSG000002423939gainY2367018523672356-1
ENSG0000023505914gainY24585087246317391
ENSG00000230814USP9YP2414gainY24674428246827861
ENSG00000230476OFD1P9Y14gainY2472713624760228-1
ENSG0000022491714gainY2481676324819006-1
ENSG00000232764TRIM60P8Y14gainY25171741251728101
ENSG0000025127514gainY61098096111670-1
ENSG00000234830FAM197Y914gainY61243086131994-1
ENSG0000023509414gainY617408361759611
ENSG00000129816TTTY1B14gainY625847262796051
ENSG00000223555USP9YP2314gainY19894090198966951
ENSG00000224964TRAPPC2P314gainY1990986319912576-1
ENSG00000224485USP9YP714gainY20020635200226861
ENSG00000230412TCEB1P1214gainY20230369202306961
ENSG00000231311PRYP214gainY20323252203383701
ENSG00000236599TCEB1P2614gainY2034081820341146-1
ENSG0000025243914gainY20444739204448331
ENSG00000131538TTTY614gainY2458574024587605-1
ENSG00000226873CDY14P14gainY25820526258215391
ENSG00000227915TCEB1P1614gainY25824651258249821
ENSG00000169763PRYP314gainY2582758725840726-1
ENSG00000232845TRAPPC2P914gainY2590898525911730-1
ENSG00000226369USP9YP1114gainY26081100260862481
ENSG00000231423RAB9AP514gainY26102716261063651
ENSG00000172342CSPG4P3Y14gainY2633265626338017-1
ENSG00000185894BPY2C14gainY2717704827208695-1
ENSG0000017233214gainY2635571426361728-1
ENSG00000227633RBMY2YP14gainY27412731274196781
ENSG00000228786LINC00266-4P14gainY2752444727540866-1
ENSG00000232064USP9YP3314gainY2773647027738492-1
ENSG00000225609CDY20P14gainY27764791277664001
ENSG00000237069TTTY23B14gainY61104876111651-1
ENSG0000025020414gainY61113366113324-1
ENSG00000237563TTTY21B14gainY631147563151181
ENSG00000185700TTTY8B14gainY63388146341671-1
ENSG00000229129ACTG1P214gainY1986888119870005-1
ENSG00000226449CDY5P14gainY19833478198350571
ENSG0000025086814gainY1988086219889280-1
ENSG00000244057LCE3C10gain11525731381525735621
ENSG00000228578TUBB1P214gainY1962871619630918-1
ENSG00000182415CDY2A14gainY20137667201404771
ENSG00000230663FAM224B14gainY1966468019691634-1
ENSG00000232744USP9YP1614gainY2028308120285685-1
ENSG00000251953RNA5SP52214gainY2050800920508124-1
ENSG00000229302TAF9P214gainY2043849320439381-1
ENSG00000225716TCEB1P1314gainY20602683206030111
ENSG00000224657RBMY2BP14gainY24795392248050251
ENSG00000230727RBMY2WP14gainY2490899824915934-1
ENSG00000233126ZNF736P3Y14gainY25195394251973421
ENSG00000183753BPY214gainY25119966251516121
ENSG00000224169HSFY6P14gainY2580398625805205-1
ENSG0000021554014gainY2568345525693089-1
ENSG00000237302OFD1P11Y14gainY25917379259442971
ENSG00000232910RAB9AP114gainY25897335258979071
ENSG00000234081TCEB1P1014gainY2615305826153384-1
ENSG00000228465TRAPPC2P1014gainY2611371126116841-1
ENSG00000229250USP9YP3114gainY2622785126236493-1
ENSG00000234399RBMY2XP14gainY2654275126549673-1
ENSG00000239533GOLGA2P2Y14gainY2635611426360978-1
ENSG00000227439TTTY17B14gainY26631479266326101
ENSG00000205916DAZ414gainY26980008270531831
ENSG0000024056614gainY26796955267976811
ENSG00000240450CSPG4P1Y14gainY27629055276328521
ENSG00000230819ZNF736P5Y14gainY2716464627165450-1
ENSG0000023361914gainY2763343127633809-1
ENSG00000238235TSPY11P14gainY613463461373161
ENSG00000212856TTTY2B14gainY62742856292186-1
ENSG00000224075TTTY2214gainY963876296508541
ENSG00000223744RBMY2GP14gainY619609362113641
ENSG00000129845TTTY114gainY95907659611898-1
ENSG00000183385TTTY814gainY952870995315661
ENSG00000235521USP9YP2714gainY1990019519901364-1
ENSG00000252315RNA5SP52014gainY19669744196698561
ENSG00000224033CDY8P14gainY20134179201357881
ENSG00000229138CDY6P14gainY1999397919995588-1
ENSG00000228571HSFY7P14gainY24683194246839961
ENSG00000225189REREP1Y14gainY25608612256184271
ENSG00000227251TRIM60P9Y14gainY25204177252053331
ENSG00000237467USP9YP3514gainY26223946262259591
ENSG00000224571USP9YP1314gainY26066052260676571
ENSG00000223698GOLGA6L11P14gainY26314334263206411
ENSG00000224210TRIM60P5Y14gainY2664085626641730-1
ENSG0000023097714gainY26328624263292181
ENSG00000226270ZNF736P2Y14gainY26829804268310821
ENSG00000232976TRIM60P10Y14gainY26805484268065531
ENSG00000227837TRIM60P11Y14gainY26837938268390791
ENSG0000025247114gainY27606157276062391
ENSG00000223978ZNF736P1Y14gainY2713134827132623-1
ENSG0000023558314gainY2765844827673933-1