Cell Line Synopsis
Cell Line Overview
Mutations
Copy Number Variation
Gene Expression
RNAi
Compound Sensitivity Profile
Similar Cell Lines

NCI-H28 - Copy Number Variation - Cell Line Synopsis

External Data Sources:COSMIC - Cell Lines Project
Genome Average Copy Number: 3.8
Chromosome Average Copy Number: 4.52

Regions

Chromosome Genome Start Genome Stop Copy Number Signal
Y23653348237656509gain
Y8838496889643113gain
Y949679795257450loss
Y696521574721172no signal
Y813750683733842no signal
Y215431232157138410gain
Y28608558590328094no signal
Y28470991285390622no signal
Y20652874206570390loss
Y579670158956490loss
Y683463668583050loss
Y809502181353780loss
Y837557684981579gain
Y765397179328024no signal
Y9695728139119295no signal
Y13914519139185980loss
Y15043770151899130loss
Y15683793157677820loss
Y23648442236532430loss
Y23799512241197802no signal
Y24177819243534708no signal
Y21161231212014240loss
Y685910269639018no signal
Y14794297150424662no signal
Y23766155237975600loss
Y17938784185546074no signal
Y793361979641650loss
Y19279765193478830loss
Y19349615193826133no signal
Y20804422208375530loss
Y21205108213857388no signal
Y16702334167334860loss
Y944187294967827no signal
Y22914302230015410loss
Y24359931244357940loss
Y747222376531390loss
Y21575002229051952no signal
Y15977206162228314no signal
Y18596847186340790loss
Y20838445211590555no signal
Y19389951194318980loss
Y265043947033282no signal
Y470337955342163no signal
Y553723656788100loss
Y568016457959035no signal
Y589587561014263no signal
Y6107902637474614gain
Y638077764076910loss
Y640832968310072no signal
Y796471380928473no signal
Y850038485087480loss
Y850907087499153no signal
Y875176688332260loss
Y890271493942671loss
Y939462094415350loss
Y9525915966823814gain
Y966931096951870loss
Y13919856144492462no signal
Y14450882146210936no signal
Y14621264147510240loss
Y14751384147935259gain
Y15190565152350553no signal
Y15235846153044260loss
Y15311544155790853no signal
Y15579215155915370loss
Y15594523156829512no signal
Y15768154159029505no signal
Y15907000159746760loss
Y16223071163889390loss
Y16392263166993342no signal
Y16734056170378663no signal
Y17038614170766520loss
Y17077548179127342no signal
Y17912965179340310loss
Y18556325185700060loss
Y18570274185956245no signal
Y18636049192751442no signal
Y19435858196176662no signal
Y196181892065256614gain
Y20657325208043048no signal
Y21386138215423800loss
Y23002346236465003no signal
Y24437432245726063no signal
Y245730522776976914gain
Y27772573284586496no signal
Y28459222284687690loss
Y28539283286062690loss

Genes

Ensembl Gene Gene Name(s) Copy Number Signal Chromosome Start Stop Strand
ENSG000002379682no signalY24086159240877401
ENSG00000225615RBMY2UP8no signalY24344576243498591
ENSG00000234131TCEB1P814gainY2466338924663720-1
ENSG00000226906TTTY414gainY25082602251194311
ENSG0000024400014gainY25163210251639681
ENSG00000225466OFD1P10Y14gainY25727742257607871
ENSG00000223407USP9YP1814gainY2580561325813969-1
ENSG00000251917RNU1-86P14gainY2609276526092918-1
ENSG00000244231CSPG4P2Y14gainY2632958126333378-1
ENSG00000224827LINC00265-2P14gainY26422392264231731
ENSG00000233740CICP214gainY2642448426427287-1
ENSG00000236379ZNF736P4Y14gainY27314746273159881
ENSG00000229709USP9YP3614gainY27725937277345911
ENSG00000225256TRAPPC2P56no signalY27845598278487091
ENSG00000252625RNU1-40P6no signalY28075126280752891
ENSG00000172283PRYP46no signalY28121660281342161
ENSG00000227629SLC25A15P14no signalY2873278928737748-1
ENSG00000188399ANKRD36P10lossY28555962285666821
ENSG00000235857CTBP2P14no signalY59001391590016351
ENSG00000232195TOMM22P22no signalY269602326962591
ENSG00000233070ZFY-AS12no signalY28348852870667-1
ENSG00000216777PRRC2CP12no signalY34176933417851-1
ENSG00000229518UBE2V1P32no signalY37343473734763-1
ENSG00000252468RNU2-57P3no signalY488711748873071
ENSG00000229643LINC0028014gainY62252606229454-1
ENSG0000023589514gainY63610176364798-1
ENSG00000224953SRIP32no signalY65870036587221-1
ENSG00000232583GPR143P2no signalY69687746974543-1
ENSG000002234220lossY754694075490691
ENSG00000234795RFTN1P10lossY75810267677302-1
ENSG00000244246ZNF736P8Y4no signalY77814637782131-1
ENSG000002282070lossY87692448771317-1
ENSG0000023002513gainY88397928842136-1
ENSG00000224408USP9YP221lossY902130390234121
ENSG00000232924TCEB1P41lossY906852490688561
ENSG00000188656TSPY7P1lossY921573192184801
ENSG000002700731lossY934520593477841
ENSG00000234803FAM197Y21lossY93552089364506-1
ENSG00000234110TSPY25P7no signalY946179294639611
ENSG00000243643TSPY20P5no signalY987380498759841
ENSG00000237447CDC27P25no signalY1002798610029907-1
ENSG000002528555no signalY1334055113340633-1
ENSG00000236477RPS24P12no signalY14365457143661621
ENSG00000232226ARSFP12no signalY1437302514378737-1
ENSG00000243980RN7SL702P2no signalY14394177143944651
ENSG00000233864TTTY159gainY14774265148041621
ENSG00000228411CDY4P2no signalY1491390614915763-1
ENSG000002235170lossY1638809216389369-1
ENSG00000226116USP9YP614gainY2002457920033510-1
ENSG00000227949CYCSP460lossY1705342717053630-1
ENSG00000233378USP9YP3414gainY20096229201051401
ENSG00000226611OFD1P2Y14gainY2024256720258088-1
ENSG00000252166RNU1-95P14gainY20278734202788931
ENSG00000232899CDY9P14gainY2034472120346300-1
ENSG00000252209RNU1-48P14gainY20648397206485581
ENSG00000230377TCEB1P78no signalY2069421220694542-1
ENSG00000240438OFD1P5Y8no signalY2074394920790963-1
ENSG00000249606TRAPPC2P70lossY2081740620818076-1
ENSG00000242153OFD1P6Y0lossY20835919209010831
ENSG00000169953HSFY25no signalY2089332620990548-1
ENSG00000176728TTTY145no signalY2103438721239302-1
ENSG000002690842no signalY2173789521738068-1
ENSG00000012817KDM5D2no signalY2186575121906825-1
ENSG00000237269RBMY2TP3no signalY2359258323599131-1
ENSG000002357193no signalY2362727023629049-1
ENSG00000242875RBMY1B9gainY23673224236876721
ENSG00000234414RBMY1A19gainY23673258237112121
ENSG000002516182no signalY24041541240437061
ENSG00000226092RBMY2AP2no signalY2407366824083297-1
ENSG000002269183no signalY23473154234807811
ENSG00000223637RBMY2EP3no signalY2355687723563471-1
ENSG000002282579gainY2369372523695897-1
ENSG00000229416USP9YP82no signalY2383913223843004-1
ENSG00000169789PRY14gainY24636544246607841
ENSG00000215537ZNF736P11Y14gainY2501269125013903-1
ENSG00000188120DAZ114gainY2527550225345241-1
ENSG00000205936PPP1R12BP214gainY25525631255388441
ENSG00000236620XKRYP314gainY2586206925872955-1
ENSG00000231540TCEB1P914gainY2595496825955206-1
ENSG00000172352CDY1B14gainY2619137626194166-1
ENSG00000248792LINC00266-2P14gainY26424828264374931
ENSG00000232003ZNF736P12Y14gainY2664641026647652-1
ENSG00000187191DAZ314gainY2690921626959626-1
ENSG00000228296TTTY4C14gainY2720923027246039-1
ENSG00000239304DNM1P4814gainY27632787276334691
ENSG00000197092GOLGA6L16P14gainY2764179827648105-1
ENSG00000172288CDY114gainY27768264277710491
ENSG00000227635USP9YP216no signalY2807998028082028-1
ENSG00000237546XKRYP66no signalY28089415281002991
ENSG000002693936no signalY2811177628114889-1
ENSG00000233156HSFY8P6no signalY28157582281583841
ENSG000002258766no signalY2839049828390720-1
ENSG00000225653RNF19BPY2no signalY36460383647587-1
ENSG00000184895SRY2no signalY26548962655740-1
ENSG000002293082no signalY390453839683611
ENSG0000024287914gainY617575161776281
ENSG00000147753TTTY714gainY631750963259471
ENSG00000099725PRKY2no signalY714201372495891
ENSG000001733570lossY877426587841141
ENSG00000232808TTTY201lossY91674899172441-1
ENSG00000229549TSPY81lossY919540692184791
ENSG00000258992TSPY11lossY923607693073571
ENSG00000236424TSPY101lossY936548993682911
ENSG00000231436RBMY3AP7no signalY94481809458885-1
ENSG00000147761TTTY7B14gainY95444339552871-1
ENSG00000228890TTTY2114gainY95552629558905-1
ENSG00000236718RBMY2QP5no signalY98600989871796-1
ENSG00000251766RNA5SP5185no signalY99280199928137-1
ENSG000002356915no signalY992841199288161
ENSG00000270455PABPC1P55no signalY13491303134933691
ENSG00000232730FAM8A4P2no signalY14442350144435621
ENSG00000233774MED14P10lossY1473091514746333-1
ENSG00000235462TAB3P10lossY1526584215274125-1
ENSG00000183878UTY3no signalY1536025915592553-1
ENSG000002526945no signalY1577984015779936-1
ENSG000002662200lossY1636406516364171-1
ENSG000002651974no signalY1839812718398238-1
ENSG0000025203814gainY1973494119735035-1
ENSG00000129873CDY2B14gainY1998929019992100-1
ENSG0000022589614gainY19838632198389601
ENSG00000237616USP9YP3214gainY2010708120109132-1
ENSG00000233522FAM224A14gainY20488139205150961
ENSG00000229406OFD1P4Y14gainY2061503620634023-1
ENSG000002515100lossY20653626207095841
ENSG00000250951USP9YP18no signalY20702866207060141
ENSG00000230458GPM6BP18no signalY20740303207404461
ENSG00000131007TTTY9B8no signalY2074309220752407-1
ENSG00000235479RAB9AP40lossY20811557208121651
ENSG00000234529GAPDHP190lossY21489455214904591
ENSG000002601972no signalY2185382721856492-1
ENSG00000198692EIF1AY2no signalY22737611227550401
ENSG00000225624TBL1YP12no signalY22889140229047861
ENSG00000224482HSFY4P0lossY2297066222973695-1
ENSG00000157828RPS4Y20lossY22918050229429181
ENSG000002279899gainY2371773823719956-1
ENSG00000184991TTTY139gainY2374548623756552-1
ENSG00000229553USP9YP178no signalY2419590224204260-1
ENSG00000228240TTTY17A14gainY24997731249988621
ENSG00000224873CDY13P14gainY2466682824667842-1
ENSG00000224866USP9YP2514gainY25880340258823961
ENSG00000223362CDY15P14gainY2600166926003238-1
ENSG00000232585OFD1P12Y14gainY26118927261412281
ENSG00000223641TTTY17C14gainY2732979027330920-1
ENSG00000233944LINC00265-3P14gainY2753930127540203-1
ENSG00000237823CDY19P14gainY2771026927712180-1
ENSG00000223856RAB9AP26no signalY2785605527859704-1
ENSG00000223406XKRYP56no signalY27898535278990171
ENSG00000252948RNU6-1314P2no signalY28507136285072391
ENSG00000232914TRAPPC2P46no signalY28050665280533971
ENSG00000237659RNASEH2CP12no signalY265786826583691
ENSG00000225878SERBP1P22no signalY46697264670889-1
ENSG000002694643no signalY53066915312605-1
ENSG00000168757TSPY214gainY611426461170601
ENSG00000234583TSPY19P14gainY61719986173115-1
ENSG00000233634GOT2P52no signalY670574867062931
ENSG00000252155RNU6-941P2no signalY724671372468201
ENSG00000238073RBMY2HP0lossY75397847544065-1
ENSG00000234850MTND2P32no signalY824028282407511
ENSG00000233699TTTY183no signalY85514118551919-1
ENSG00000228383FAM197Y71lossY92054129235047-1
ENSG00000237802FAM197Y61lossY92257319233636-1
ENSG00000230066FAM197Y31lossY93348969342768-1
ENSG00000226223TSPY16P7no signalY94778589478325-1
ENSG0000022837914gainY965092496551221
ENSG00000234950RBMY2OP5no signalY978916297970321
ENSG000002351935no signalY992563599271951
ENSG000002269755no signalY1000739710007923-1
ENSG00000259154DUX4L175no signalY13470597134718631
ENSG000002702425no signalY13551375135527521
ENSG000002651612no signalY1394744313947512-1
ENSG000002245180lossY17053626170545951
ENSG00000252012RNA5SP52114gainY19671654196717691
ENSG00000225740TCEB1P614gainY1994908119949408-1
ENSG00000225895TRAPPC2P814gainY20267200202699881
ENSG00000233120USP9YP1514gainY20278413202795811
ENSG0000024464614gainY20290496202989131
ENSG00000229465ACTG1P1114gainY20309770203108941
ENSG00000249726TUBB1P114gainY20548860205510371
ENSG00000172468HSFY18no signalY20708557207508491
ENSG00000248573PRYP65no signalY2095259520952937-1
ENSG00000228193TCEB1P145no signalY20949636209499661
ENSG00000217179MTCYBP25no signalY21033988210341581
ENSG00000252766RNU6-255P0lossY2118086921180973-1
ENSG00000228764ZNF885P2no signalY22551937225586821
ENSG00000215580BCORP12no signalY2161731721665039-1
ENSG00000205944DAZ214gainY25365594254375031
ENSG0000025192514gainY2556924625569383-1
ENSG0000023007314gainY25669468256715161
ENSG0000023664714gainY25695956256975321
ENSG0000026793514gainY25847479258505921
ENSG00000232424USP9YP2914gainY2588640525892840-1
ENSG00000252681RNU1-97P14gainY2588708925887252-1
ENSG00000231026XKRYP414gainY2606338826063870-1
ENSG00000227871USP9YP1214gainY2609207426098440-1
ENSG00000231375CDY17P14gainY2619602526197634-1
ENSG00000232205CDY18P14gainY26250254262521651
ENSG0000023598114gainY26288505263039901
ENSG00000242854DNM1P2414gainY2632546326329652-1
ENSG00000242425RN7SL818P14gainY2635710726357382-1
ENSG00000235412TTTY4B14gainY26716349267531721
ENSG00000225491UBE2Q2P4Y14gainY2637897326385131-1
ENSG00000183795BPY2B14gainY26753707267853541
ENSG00000233652CICP114gainY27535139275379581
ENSG00000223636UBE2Q2P5Y14gainY27577303275834621
ENSG00000172297GOLGA2P3Y14gainY27600708276067191
ENSG0000027204214gainY27605054276053291
ENSG00000172294CSPG4P4Y14gainY27624416276328521
ENSG00000232614USP9YP96no signalY2787615827881307-1
ENSG00000225326USP9YP196no signalY2789474327896353-1
ENSG00000229343CDY22P6no signalY27959160279607131
ENSG00000223655RAB9AP36no signalY2806447028065042-1
ENSG00000230854USP9YP206no signalY28069535280759731
ENSG000002517966no signalY28393531283936681
ENSG00000229745BPY2DP4no signalY78010387805681-1
ENSG00000241200ZNF736P7Y4no signalY78590287859847-1
ENSG00000239893ZNF736P9Y0lossY79369377938764-1
ENSG00000224634ZNF736P6Y2no signalY821897282201841
ENSG00000232348LINC002790lossY850633585128831
ENSG00000216824ZNF736P10Y2no signalY82868328287941-1
ENSG00000232419TTTY193no signalY857251385733241
ENSG00000232235CDY3P1lossY90036949005311-1
ENSG00000197038RBMY1A3P1lossY91487399160483-1
ENSG00000225560FAM197Y81lossY91851209193010-1
ENSG000002255161lossY92930129344176-1
ENSG00000236786TSPY15P1lossY938571793882901
ENSG000002326170lossY950283895066191
ENSG00000212855TTTY214gainY957819395960851
ENSG00000231874TSPY18P5no signalY970727397083901
ENSG00000239225TTTY235no signalY974840797495711
ENSG00000252289RNA5SP5195no signalY99304849930602-1
ENSG000002314115no signalY1000919910010334-1
ENSG00000226061PCMTD1P15no signalY10011462100118161
ENSG000002519665no signalY10033981100340931
ENSG000002713655no signalY1326274113262939-1
ENSG00000259029DUX4L185no signalY13477233134784991
ENSG00000183704SLC9B1P15no signalY1349624113524717-1
ENSG00000234385RCC2P15no signalY1390175813903233-1
ENSG00000114374USP9Y2no signalY14813160149727641
ENSG00000067048DDX3Y2no signalY15016019150323901
ENSG00000215414PSMA6P13no signalY15398518153992581
ENSG00000154620TMSB4Y5no signalY15815447158179041
ENSG00000129864VCY4no signalY1609765216098393-1
ENSG00000228787NLGN4Y-AS13no signalY1690552216915913-1
ENSG00000252173RNU6-109P4no signalY18360815183609211
ENSG00000252323RNU6-184P4no signalY1844816318448269-1
ENSG00000228518SURF6P10lossY19304706193055321
ENSG00000224989FAM41AY12no signalY19612838196268981
ENSG00000238191CLUHP114gainY1973313919737712-1
ENSG00000224166PRYP114gainY1984140819856476-1
ENSG00000226353TAF9P114gainY19740393197412821
ENSG00000252513RNU1-128P14gainY1990088319901042-1
ENSG00000226011OFD1P1Y14gainY19921687199372091
ENSG00000237558CDY7P14gainY20063469200653801
ENSG00000228945CLUHP214gainY20442064204466471
ENSG00000252667RNA5SP52314gainY2050992120510033-1
ENSG00000226362FAM41AY214gainY2055288020566932-1
ENSG00000227494USP9YP1414gainY20642973206492861
ENSG00000233546PRYP58no signalY20691244206915091
ENSG00000238135USP9YP105no signalY20987993209913731
ENSG00000217896ZNF839P15no signalY21147061211482841
ENSG00000185275CD24P45no signalY2115435321154595-1
ENSG00000237997RCC2P22no signalY2214846122149738-1
ENSG00000232522ZNF886P2no signalY2216307122174090-1
ENSG00000229551GAPDHP173no signalY23023223230242231
ENSG00000183146CYorf173no signalY2354484023548246-1
ENSG00000169849TSPY14P3no signalY23630044236325691
ENSG00000169811RBMY1HP9gainY23655405236638541
ENSG000002423939gainY2367018523672356-1
ENSG000002297252no signalY24017478240196971
ENSG00000131548TTTY6B8no signalY24291113242929781
ENSG00000169800RBMY1F8no signalY2431468924329129-1
ENSG00000243040RBMY2FP3no signalY24455006244679721
ENSG0000023505914gainY24585087246317391
ENSG00000230814USP9YP2414gainY24674428246827861
ENSG00000230476OFD1P9Y14gainY2472713624760228-1
ENSG0000022491714gainY2481676324819006-1
ENSG00000232764TRIM60P8Y14gainY25171741251728101
ENSG00000229163NAP1L1P22no signalY27970422799161-1
ENSG00000223600EEF1A1P412no signalY28631082863314-1
ENSG00000176679TGIF2LY2no signalY344708234480821
ENSG00000099715PCDH11Y3no signalY486826756102651
ENSG000002184102no signalY37192653720910-1
ENSG00000214207KRT18P103no signalY544118654424721
ENSG00000235175RPL26P370lossY56613415661778-1
ENSG000002518795no signalY574228757423791
ENSG0000025127514gainY61098096111670-1
ENSG00000234830FAM197Y914gainY61243086131994-1
ENSG0000023509414gainY617408361759611
ENSG00000129816TTTY1B14gainY625847262796051
ENSG00000099721AMELY2no signalY67339596742068-1
ENSG00000237701ATP5JP12no signalY676879467694131
ENSG00000252472RNU6-521P2no signalY72910957291199-1
ENSG00000225520TTTY160lossY75673987569288-1
ENSG00000223555USP9YP2314gainY19894090198966951
ENSG00000224964TRAPPC2P314gainY1990986319912576-1
ENSG00000224485USP9YP714gainY20020635200226861
ENSG00000230412TCEB1P1214gainY20230369202306961
ENSG00000231311PRYP214gainY20323252203383701
ENSG00000236599TCEB1P2614gainY2034081820341146-1
ENSG0000025243914gainY20444739204448331
ENSG00000236429GPM6BP25no signalY2090372920903872-1
ENSG00000249501USP9YP25no signalY2093816520941313-1
ENSG00000238088OFD1P7Y5no signalY21010150210291661
ENSG00000229236TTTY102no signalY2262755422681114-1
ENSG00000229159TSPY23P8no signalY24329997243321681
ENSG000002168443no signalY2300514223005596-1
ENSG00000131538TTTY614gainY2458574024587605-1
ENSG00000226873CDY14P14gainY25820526258215391
ENSG00000227915TCEB1P1614gainY25824651258249821
ENSG00000169763PRYP314gainY2582758725840726-1
ENSG00000232845TRAPPC2P914gainY2590898525911730-1
ENSG00000226369USP9YP1114gainY26081100260862481
ENSG00000231423RAB9AP514gainY26102716261063651
ENSG00000172342CSPG4P3Y14gainY2633265626338017-1
ENSG00000185894BPY2C14gainY2717704827208695-1
ENSG0000017233214gainY2635571426361728-1
ENSG00000227633RBMY2YP14gainY27412731274196781
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