Cell Line Synopsis
Cell Line Overview
Mutations
Copy Number Variation
Gene Expression
RNAi
Compound Sensitivity Profile
Similar Cell Lines

NCI-H28 - Copy Number Variation - Cell Line Synopsis

External Data Sources:COSMIC - Cell Lines Project
Genome Average Copy Number: 3.8
Chromosome Average Copy Number: 4.62

Regions

Chromosome Genome Start Genome Stop Copy Number Signal
1727689377281114913gain
11060192061060223760loss
115255570715258623910gain
125593129256469470loss
12487958522492243895no signal
12487320332487952900loss
1728119041060133775no signal
16173610498174no signal
11059482168308212no signal
116831863170484804no signal
117048873193937102no signal
119395479194927070loss
119492788255833422no signal
125646987317769512no signal
131780210484532274no signal
148457543535318585no signal
153531968557234414no signal
11977485862146023005no signal
12146029892194027666no signal
12194050672373034175no signal
12373036682396104156no signal
12396106202487252355no signal
155724024557243000loss
155729368727689175no signal
11060240561094592965no signal
11094603141126235234no signal
11126240951525555285no signal
11525862791856311115no signal
11856312151977465656no signal
11977470671977480670loss

Genes

Ensembl Gene Gene Name(s) Copy Number Signal Chromosome Start Stop Strand
ENSG000002414755no signal12347960172348028501
ENSG00000207181SNORA14B5no signal1235291118235291252-1
ENSG00000236863RPL23AP235no signal12354591802354596501
ENSG00000229795RPS21P15no signal12355963002355965461
ENSG00000235638MTND6P145no signal12357008202357013411
ENSG00000235674LDHAP25no signal12359013052359022891
ENSG00000222650RNU2-70P5no signal12364310802364312581
ENSG00000223776LGALS8-AS15no signal1236686369236687808-1
ENSG00000119285HEATR15no signal1236712305236767804-1
ENSG000002321546no signal1238111317238112443-1
ENSG00000224783MIPEPP26no signal1238940349238942500-1
ENSG00000225723MTND6P156no signal12381125142381130341
ENSG000002319795no signal1240078739240080255-1
ENSG000002260145no signal1240713167240713678-1
ENSG000002314405no signal1240751822240754048-1
ENSG00000233615HNRNPA1P425no signal12410829532410839091
ENSG000002380855no signal1241161751241162094-1
ENSG00000196289BECN1P15no signal12421210392421223641
ENSG00000197769MAP1LC3C5no signal1242158792242162375-1
ENSG00000222120RNA5SP815no signal12422975742422976831
ENSG00000054282SDCCAG85no signal12434193202436633941
ENSG000002321845no signal1243866159243904123-1
ENSG000002299605no signal1244232122244256328-1
ENSG00000252282RNU6-1089P5no signal12451863172451864201
ENSG00000225222CHCHD4P55no signal12463420802463425061
ENSG000002350215no signal12468533492468551231
ENSG00000143653SCCPDH5no signal12468873492469314391
ENSG000002020795no signal12474581372474582431
ENSG00000232215OR2L6P5no signal12481664312481673701
ENSG000002000855no signal12481924222481925231
ENSG00000171180OR2M45no signal12484022312484031661
ENSG00000196944OR2T45no signal12485248832485259291
ENSG00000227152OR2T75no signal12486045082486054341
ENSG00000196240OR2T25no signal12486160772486171301
ENSG00000266949LYPD85no signal1248902716248903150-1
ENSG00000182783OR2T295no signal1248721784248722797-1
ENSG00000175137SH3BP5L5no signal1249104648249120832-1
ENSG000002300635no signal12124707902124729211
ENSG000002253385no signal1212482393212482860-1
ENSG000002280675no signal12127190362127294071
ENSG00000264590RN7SL512P5no signal1212789050212789295-1
ENSG000002260365no signal12128206382128210971
ENSG000002351825no signal12130266222130267681
ENSG00000162769FLVCR15no signal12130315972130727051
ENSG000002282555no signal12139047592139679301
ENSG00000117724CENPF6no signal12147765382148379311
ENSG00000136636KCTD36no signal12157407352157951491
ENSG00000231814LINC002106no signal12180662422180941461
ENSG00000234070SPATA17-AS16no signal1217954540217958462-1
ENSG000002307146no signal12182051772182070021
ENSG00000215817ZC3H11B5no signal1219782859219786462-1
ENSG000002216735no signal12201360282201362061
ENSG00000162813BPNT15no signal1220230824220263804-1
ENSG00000067704IARS25no signal12202674442203213801
ENSG00000116141MARK15no signal12207015682208378031
ENSG00000117791MARC25no signal12209215672209581501
ENSG00000221571RNU6ATAC35P5no signal12209989622209993891
ENSG000002380785no signal12210025972210057711
ENSG00000136630HLX5no signal12210516992210584011
ENSG00000234419CICP135no signal12226414362226442241
ENSG00000197520FAM177B5no signal12229105492229241471
ENSG000002266015no signal12233544862233614961
ENSG00000143514TP53BP25no signal1223967601224033674-1
ENSG00000188460ACTBP115no signal1224051428224052553-1
ENSG000002430005no signal12241835972241913561
ENSG00000252484RN7SKP495no signal1224294984224295243-1
ENSG000002367735no signal1224363178224363408-1
ENSG000002018985no signal12243673432243674691
ENSG00000266618MIR47425no signal1224585929224586013-1
ENSG00000143786CNIH35no signal12246223622249282511
ENSG000002333845no signal1224802998224803922-1
ENSG00000185842DNAH145no signal12250839642255869961
ENSG00000223306RNU6-1304P5no signal12259289772259290841
ENSG00000243709LEFTY15no signal1226073982226099082-1
ENSG00000143811PYCR25no signal1226107578226111978-1
ENSG00000183814LIN95no signal1226418850226497570-1
ENSG00000236994YBX1P95no signal1226505716226506394-1
ENSG00000143799PARP15no signal1226548392226595780-1
ENSG00000177770CDKN2AIPNLP15no signal1226680889226681190-1
ENSG00000143740SNAP475no signal12279162402279689271
ENSG00000233003CICP265no signal1228162980228165894-1
ENSG00000181873IBA575no signal12283535162283699581
ENSG000002700945no signal12285819912285846681
ENSG00000199337RNA5S35no signal1228750497228750615-1
ENSG00000168118RAB4A5no signal12294068222294416411
ENSG00000143632ACTA15no signal1229566992229569845-1
ENSG00000135776ABCB105no signal1229652329229694442-1
ENSG000002280585no signal12301384772301429091
ENSG00000119280C1orf1985no signal1230972865231005335-1
ENSG000002233935no signal12310105922310147611
ENSG000002389855no signal1231031178231031250-1
ENSG00000223982SNRPD2P25no signal1231611702231612034-1
ENSG00000229228LINC005825no signal1231727038231747836-1
ENSG00000226758DISC1-IT15no signal12320615802320809791
ENSG000002363725no signal1232310678232315859-1
ENSG00000242794RN7SL299P5no signal12323586122323588911
ENSG000002364975no signal1232863000232878461-1
ENSG00000206835RNU1-74P5no signal1232967763232967933-1
ENSG00000265744MIR44275no signal12337598982337599651
ENSG00000236101RAC1P75no signal1234162597234162973-1
ENSG000002317685no signal1234663637234667525-1
ENSG00000135838NPL5no signal11827584281827995191
ENSG00000224040HMGN1P45no signal1182911250182911539-1
ENSG000002275545no signal1183723553183724072-1
ENSG000002527905no signal11846470681846471411
ENSG000002280126no signal1187505233187505431-1
ENSG000001507326no signal1188036429188036656-1
ENSG000002711876no signal1191148651191148869-1
ENSG000002338826no signal1191190289191197597-1
ENSG00000127074RGS136no signal11926052751926293901
ENSG00000231767MIR44266no signal11926853131926857831
ENSG000002725796no signal1193059996193060686-1
ENSG00000134371CDC736no signal11930911471932230311
ENSG00000221680MIR12786no signal11931056331931057131
ENSG00000162687KCNT26no signal1196194909196578355-1
ENSG00000116785CFHR36no signal11967439251967632031
ENSG000002285305no signal11998461061998466861
ENSG00000202491RNU6-716P5no signal1199977633199977735-1
ENSG00000118193KIF145no signal1200520628200589862-1
ENSG00000118197DDX595no signal1200593024200639097-1
ENSG000002600885no signal12006386352006633781
ENSG00000201032RNU6-704P5no signal1200902473200902575-1
ENSG00000174307PHLDA35no signal1201434620201438365-1
ENSG00000159176CSRP15no signal1201452658201478584-1
ENSG000002363905no signal1201642233201643272-1
ENSG00000200942RNU6-501P5no signal12017025342017026331
ENSG000002346785no signal1201969222201979481-1
ENSG00000143858SYT25no signal1202559724202679545-1
ENSG000002268625no signal12025733962025744211
ENSG00000117139KDM5B5no signal1202696526202778598-1
ENSG000001994715no signal1202884008202884108-1
ENSG00000143847PPFIA45no signal12029956262030478681
ENSG000002246715no signal1203113092203122028-1
ENSG00000188783PRELP5no signal12034449562034604801
ENSG00000058673ZC3H11A5no signal12037647822038232521
ENSG00000182004SNRPE5no signal12038307312038396781
ENSG000002610655no signal12041001902041010941
ENSG000002316915no signal12042461332042470761
ENSG000002529465no signal1204873875204873946-1
ENSG000002715805no signal12050602912050610741
ENSG00000133069TMCC25no signal12051973042052424711
ENSG00000162873KLHDC8A5no signal1205305220205326218-1
ENSG00000226235LEMD1-AS15no signal12053423802053565681
ENSG00000186007LEMD15no signal1205350506205425082-1
ENSG00000196550FAM72A5no signal12061369162061551511
ENSG000002407545no signal1206288156206306131-1
ENSG00000136653RASSF55no signal12066808792067626161
ENSG00000143486EIF2D5no signal1206744620206785904-1
ENSG000002716805no signal12070792732070797381
ENSG00000182795C1orf1165no signal1207191866207206101-1
ENSG00000123838C4BPA5no signal12072776072073183171
ENSG00000197721CR1L5no signal12078184582079117611
ENSG000002342195no signal12079359292079366081
ENSG00000203709C1orf1325no signal1207974863208042495-1
ENSG000002268435no signal1208428635208428721-1
ENSG000002614535no signal1208780445208785537-1
ENSG00000225712ATP5G2P15no signal1209441143209441568-1
ENSG000002242605no signal1209701800209741018-1
ENSG00000008118CAMK1G5no signal12097570622097872831
ENSG00000264831MIR42605no signal1209796789209796855-1
ENSG00000117594HSD11B15no signal12098595102099082951
ENSG000002613145no signal1211756357211757067-1
ENSG000002220805no signal1211826798211826891-1
ENSG00000117650NEK25no signal1211836114211848960-1
ENSG00000143493INTS75no signal1212113741212208884-1
ENSG00000162723SLAMF95no signal1159921282159924044-1
ENSG00000018625ATP1A25no signal11600855491601133811
ENSG00000162734PEA155no signal11601751271601851661
ENSG00000235082SUMO1P35no signal11602871931602874961
ENSG00000171786NHLH15no signal11603368571603426381
ENSG00000066294CD845no signal1160510885160549306-1
ENSG000002642865no signal1160515438160515535-1
ENSG000002288635no signal11606405681606536981
ENSG000002130805no signal11608647701608658661
ENSG000002701495no signal1160967747161008752-1
ENSG00000158874APOA25no signal1161192082161193421-1
ENSG00000143252SDHC5no signal11612840471613329841
ENSG00000143226FCGR2A5no signal11614752201614938031
ENSG000002245155no signal1161526080161526868-1
ENSG00000241347RN7SL466P5no signal11617055981617058891
ENSG00000118217ATF65no signal11617360841619338601
ENSG000002270945no signal1162286642162287584-1
ENSG00000212527RNA5SP635no signal11634792741634793851
ENSG000002254875no signal1164890555164890866-1
ENSG000002247025no signal11651798641651823271
ENSG000002380225no signal11651852171651883411
ENSG00000143171RXRG5no signal1165370159165414433-1
ENSG000002069905no signal1165631822165631924-1
ENSG000002158355no signal1166244866166246834-1
ENSG000002722055no signal1167189068167189749-1
ENSG000002334115no signal1167426620167427898-1
ENSG000002310295no signal11675606291675610831
ENSG000002416665no signal1167596622167599911-1
ENSG00000143147GPR1615no signal1168053997168106821-1
ENSG00000143155TIPRL5no signal11681481711681699501
ENSG00000237049RPL34P15no signal11681798541681802071
ENSG00000213064SFT2D25no signal11681951761682222631
ENSG000002277225no signal11683382921683388391
ENSG00000143184XCL15no signal11685457111685513151
ENSG00000143156NME75no signal1169101769169337205-1
ENSG000002032605no signal1169990599169991390-1
ENSG000002353035no signal11705679951706164801
ENSG000002066925no signal1171223045171223161-1
ENSG00000034971MYOC5no signal1171604557171621823-1
ENSG00000230364RPL4P35no signal1171652268171653578-1
ENSG00000010165METTL135no signal11717507881717831631
ENSG00000208317SNORD785no signal1173834760173834824-1
ENSG00000252231RNA5SP675no signal11738902081738903381
ENSG00000236535RC3H1-IT15no signal1173978405173985344-1
ENSG000002388725no signal1174169267174169368-1
ENSG00000116147TNR5no signal1175284330175712906-1
ENSG000002324635no signal1176200336176200966-1
ENSG00000152092ASTN15no signal1176826438177134109-1
ENSG000002275795no signal1177362423177566844-1
ENSG00000075391RASAL25no signal11780628641784486441
ENSG000001849095no signal11785119501785175791
ENSG00000201347RNA5SP695no signal11785300481785301641
ENSG000002730625no signal1178693441178695420-1
ENSG00000116194ANGPTL15no signal1178818840178840187-1
ENSG00000116199FAM20B5no signal11789949391790456971
ENSG000002327505no signal1179004444179004787-1
ENSG00000231564EIF4A1P115no signal11791708401791710611
ENSG000002319665no signal1179798744179805259-1
ENSG00000169905TOR1AIP25no signal1179809102179846938-1
ENSG000002351455no signal11799378211799386411
ENSG000002431555no signal1180913178180945618-1
ENSG000001794525no signal11812055241812077401
ENSG00000222397RN7SKP2295no signal1181808608181808909-1
ENSG000002286645no signal11822976321822981421
ENSG00000183598HIST2H3D5no signal1149784826149785236-1
ENSG00000183558HIST2H2AA35no signal1149813505149814478-1
ENSG00000184260HIST2H2AC5no signal11498585251498589611
ENSG00000014914MTMR115no signal1149900543149908791-1
ENSG00000136631VPS455no signal11500393691501175051
ENSG000002385265no signal11502340931502341961
ENSG00000118292C1orf545no signal11502406001502533271
ENSG00000163125RPRD25no signal11503355671504490421
ENSG00000264553MIR42575no signal11505244051505244901
ENSG00000143387CTSK5no signal1150768684150780799-1
ENSG00000143409FAM63A5no signal1150969025150980851-1
ENSG00000143458GABPB25no signal11510430541510980181
ENSG000002611685no signal1151102551151104086-1
ENSG00000143434SEMA6C5no signal1151104161151119104-1
ENSG00000143398PIP5K1A5no signal11511704251512220121
ENSG000002379765no signal11513194431513205031
ENSG000002325365no signal11515129921515343311
ENSG00000143376SNX275no signal11515845411516715671
ENSG00000206635RNU6-1062P5no signal11516018001516019061
ENSG00000182134TDRKH5no signal1151742583151763892-1
ENSG00000229021NBPF18P5no signal11519670071520152501
ENSG00000163191S100A115no signal1152004982152020383-1
ENSG00000143631FLG5no signal1152274651152297679-1
ENSG00000187223LCE2D5no signal11526358721526371351
ENSG00000198854C1orf685no signal11526919981526929051
ENSG00000240386LCE1F5no signal11527488481527494451
ENSG00000235942LCE6A5no signal11528153441528164591
ENSG00000163207IVL5no signal11528810211528843621
ENSG00000159516SPRR2G5no signal1153122058153123345-1
ENSG00000203784LELP15no signal11531759191531775961
ENSG000002382795no signal11535060791535075911
ENSG00000196754S100A25no signal1153533584153540366-1
ENSG00000143621ILF25no signal1153634512153643524-1
ENSG000002385115no signal1153726600153726703-1
ENSG000002526695no signal1153970517153970627-1
ENSG000002362635no signal1155180942155183610-1
ENSG000002161095no signal1155206540155206628-1
ENSG00000116521SCAMP35no signal1155225770155232221-1
ENSG00000160753RUSC15no signal11552906871553009051
ENSG000002388055no signal1155385349155385453-1
ENSG00000225082DAP3P15no signal11555564351555719881
ENSG00000132676DAP35no signal11556577511557088011
ENSG000002276735no signal1155679889155680354-1
ENSG00000132718SYT115no signal11558293001558549901
ENSG00000116584ARHGEF25no signal1155916630155976861-1
ENSG00000201614RNU4-19P5no signal11558640721558641771
ENSG00000116586LAMTOR25no signal11560245431560283011
ENSG00000163468CCT35no signal1156278759156337664-1
ENSG000002281555no signal11562933021562934871
ENSG000002388435no signal11564991221564992211
ENSG000002375885no signal1156657487156661789-1
ENSG00000143320CRABP25no signal1156669398156675608-1
ENSG00000143294PRCC5no signal11567204021567706071
ENSG000002299615no signal11571551781571571951
ENSG000002272175no signal11576615521576662491
ENSG000002317005no signal11576788761576794331
ENSG00000163534FCRL15no signal1157764193157789895-1
ENSG000002316665no signal1158101834158110429-1
ENSG00000158477CD1A5no signal11582239271582280591
ENSG00000163554SPTA15no signal1158580496158656488-1
ENSG00000203757OR6K35no signal1158686958158687953-1
ENSG000002256705no signal1159165775159177763-1
ENSG00000213088DARC5no signal11591730971591762901
ENSG00000196266OR10J35no signal1159283460159284449-1
ENSG00000228054RANP54no signal11095894501095901041
ENSG00000134243SORT14no signal1109852192109940573-1
ENSG00000065135GNAI34no signal11100912331101369751
ENSG000002417204no signal11102684421103178741
ENSG00000197106SLC6A174no signal11106931081107448241
ENSG00000224699LAMTOR5-AS14no signal11109254411109749821
ENSG000002616544no signal1111478991111484975-1
ENSG00000231346LINC011604no signal1112142277112151345-1
ENSG00000171385KCND34no signal1112313284112531777-1
ENSG000002391115no signal11127381241127382281
ENSG00000134245WNT2B5no signal11130091631130727871
ENSG00000007341ST7L5no signal1113066140113163447-1
ENSG00000081026MAGI35no signal11139333711142285451
ENSG00000237278RLIMP25no signal1113667943113669505-1
ENSG000002707805no signal1114544055114544857-1
ENSG00000175984DENND2C5no signal1115125469115213043-1
ENSG00000116748AMPD15no signal1115215719115238239-1
ENSG000002019005no signal11152703411152704451
ENSG00000134198TSPAN25no signal1115590632115632121-1
ENSG000002269735no signal11160145621160186481
ENSG000002075025no signal1116164493116164626-1
ENSG000002210405no signal11168212281168214421
ENSG000002692795no signal1116915890116926718-1
ENSG000002331545no signal1116966346117021464-1
ENSG000002249505no signal1117035645117041834-1
ENSG00000116815CD585no signal1117057157117113661-1
ENSG000002714275no signal1117907521117908095-1
ENSG000002386795no signal11198016641198017641
ENSG000002277125no signal1119802888119869926-1
ENSG00000116882HAO25no signal11199114021199367531
ENSG00000230921HAO2-IT15no signal11199115691199129541
ENSG00000203859HSD3B25no signal11199575541199656581
ENSG000002327805no signal1119977079119977703-1
ENSG00000226443GAPDHP325no signal1120076372120077369-1
ENSG00000249798HSD3BP35no signal11200811321200885361
ENSG00000240244GAPDHP335no signal1120138790120139802-1
ENSG000002330295no signal11209256341209330001
ENSG00000198019FCGR1B5no signal1120926979120935937-1
ENSG000002308065no signal1121102017121140666-1
ENSG000002654665no signal11426560621426561441
ENSG000002360555no signal1142790583142791175-1
ENSG00000232745ANKRD20A14P5no signal11428035321428272351
ENSG000002308505no signal11431190611432334171
ENSG000002346545no signal11432458231432462101
ENSG00000236334PPIAL4G5no signal1143767144143767881-1
ENSG00000215784FAM72D5no signal1143896452143913143-1
ENSG00000235398LINC006235no signal1144275918144341756-1
ENSG00000201699RNU1-59P5no signal11445340381445341991
ENSG000002158615no signal1144676874144679969-1
ENSG00000181039ANKRD34A5no signal11454705081454756461
ENSG00000152022LIX1L5no signal11454770851455016691
ENSG00000117262GPR89A5no signal1145764411145827103-1
ENSG000002357025no signal11458272051458331181
ENSG00000152042NBPF115no signal1146032647146082765-1
ENSG00000180867PDIA3P15no signal11466496921466512061
ENSG00000143140GJA55no signal1147228332147245484-1
ENSG00000121634GJA85no signal11473749461473813931
ENSG00000238677RNA5SP585no signal11476659931476661151
ENSG000002527445no signal11478023961478025191
ENSG00000256374PPIAL4D5no signal1148201752148202536-1
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