Cell Line Synopsis
Cell Line Overview
Mutations
Copy Number Variation
Gene Expression
RNAi
Compound Sensitivity Profile
Similar Cell Lines

NCI-H2342 - Copy Number Variation - Cell Line Synopsis

External Data Sources:COSMIC - Cell Lines Project
Genome Average Copy Number: 3.66

Regions

Chromosome Genome Start Genome Stop Copy Number Signal
Y6859102707011911gain
Y8838496889381814gain
Y8564280864102510gain
201599585160053910gain
Y6096695638826614gain
Y8375576853008910gain
Y9525915975775613gain
289145825895480659gain
521516194215736869gain
5215740992195743714gain
5219687332252569610gain
523421218239458039gain
711738294911759790514gain
711759951411829413513gain
711829999711916106110gain
81230711741234878619gain
81234886371305802619gain
81342198181364486879gain
11977166099818957310gain
12578101525954420311gain
12595444326144663013gain

Genes

Ensembl Gene Gene Name(s) Copy Number Signal Chromosome Start Stop Strand
ENSG00000175203DCTN211gain125792388557941114-1
ENSG0000025734211gain125808791558115293-1
ENSG00000135502SLC26A1011gain1258013310580199341
ENSG00000123297TSFM11gain1258176372582018541
ENSG00000037897METTL111gain125816225458166576-1
ENSG00000207789MIR26A211gain125821839258218475-1
ENSG0000023717613gain1260205883602063571
ENSG00000244390RPS6P2211gain1259413950594146751
ENSG0000025818413gain1260609775606101651
ENSG000002543139gain8134798336134798511-1
ENSG00000178764ZHX29gain81237936331239867501
ENSG00000136986DERL19gain8124025404124054663-1
ENSG000002536079gain81240148001240429911
ENSG000002541139gain8124575310124581002-1
ENSG00000259305ZHX1-C8ORF769gain8124238431124279627-1
ENSG00000251840RN7SKP1559gain81246009991246012861
ENSG00000183665TRMT129gain81254630481254743911
ENSG000002507279gain81251541291251557531
ENSG00000242170RN7SL329P9gain81262828461262831421
ENSG000002504289gain81259326701259343181
ENSG000002544319gain8126360438126363658-1
ENSG00000168672FAM84B9gain8127564687127570638-1
ENSG000002534279gain81274864341275048411
ENSG000002715099gain81283044781283046851
ENSG000002540109gain81275691411275696781
ENSG00000249375CASC119gain8128698588128746213-1
ENSG00000222501RNU4-25P9gain8129022628129022857-1
ENSG00000249859PVT19gain81288067791291134991
ENSG00000221261MIR12089gain81291623621291624341
ENSG00000213430HSPD1P114gain521882694218844211
ENSG000002485919gain523456577234569591
ENSG0000025550210gain119774978197813762-1
ENSG0000025455510gain119777925397779537-1
ENSG0000022998210gain7118520157118521342-1
ENSG00000223744RBMY2GP14gainY619609362113641
ENSG00000129845TTTY113gainY95907659611898-1
ENSG00000183385TTTY813gainY952870995315661
ENSG00000239855IGKV1-69gain28926578189266286-1
ENSG00000244437IGKV3-159gain28938467389385283-1
ENSG00000241755IGKV1-99gain28930947989310012-1
ENSG00000253998IGKV2-299gain28953365589534393-1
ENSG00000239951IGKV3-209gain28944205789442643-1
ENSG0000022471311gain125800590158013421-1
ENSG0000023843611gain125806272758062822-1
ENSG0000024299011gain1258068448580690331
ENSG00000139266MARCH911gain1258148881581541901
ENSG0000026646511gain125816803258168101-1
ENSG00000206749RNU6-1083P11gain125819993758200043-1
ENSG0000025795311gain1258230875582365281
ENSG00000166896XRCC6BP111gain1258335324583510521
ENSG0000025766811gain125837757858378544-1
ENSG00000251931RNU6-871P13gain125984445459844553-1
ENSG0000025744311gain1259314420594580191
ENSG0000026443713gain126042055260420638-1
ENSG0000025260713gain126073560560735722-1
ENSG000002660969gain8130508468130508569-1
ENSG000002646809gain8130509594130509674-1
ENSG00000270132WISP1-OT19gain81342412991342419401
ENSG000002535939gain81348987391349146501
ENSG000002712409gain8134975235134975502-1
ENSG000002553649gain8123426571123440790-1
ENSG00000253463HMGB1P199gain81241353461241359221
ENSG000002532589gain8124193878124195028-1
ENSG00000156795WDYHV19gain81244289651244794701
ENSG00000176853FAM91A19gain81247806961248276921
ENSG000002542499gain8125048251125052709-1
ENSG000002554919gain8125823860125827924-1
ENSG00000206695RNU6-442P9gain81269131951269132981
ENSG00000245164LINC008619gain8126934552126963493-1
ENSG00000207138RNU6-869P9gain81275170081275171141
ENSG000002535739gain8127779121127802882-1
ENSG00000246228CASC89gain8128302062128494384-1
ENSG00000256655TMEM759gain8128959126128960591-1
ENSG00000221771MIR12059gain81289728791289729411
ENSG00000222755RN7SKP2069gain81303032291303035211
ENSG000002655139gain8130508088130508189-1
ENSG00000154162CDH1214gain52175078222853731-1
ENSG0000025538010gain119800096798001926-1
ENSG0000022413614gain71175229131175237291
ENSG00000106013ANKRD713gain71178547271178827851
ENSG00000111012CYP27B111gain125815611758162769-1
ENSG00000222210RN7SKP6511gain125837174858372060-1
ENSG0000025813311gain1258788379587889211
ENSG00000241423RPL21P10311gain1258638161586386481
ENSG000002122739gain8134656841134656968-1
ENSG00000104419NDRG19gain8134249414134314265-1
ENSG000002652669gain81362520331362521021
ENSG00000207582MIR30B9gain8135812763135812850-1
ENSG000002596319gain8123989266123997869-1
ENSG000002720439gain81237929991237933101
ENSG00000266324MIR46639gain8124228028124228103-1
ENSG00000156804FBXO329gain8124510129124553446-1
ENSG00000254294IMPDH1P69gain81244128221244143351
ENSG00000164983TMEM659gain8125324231125384933-1
ENSG00000175946KLHL389gain8124657767124665190-1
ENSG000002553139gain8125948766125956007-1
ENSG00000170881RNF1399gain81254869791255001551
ENSG00000250563KNOP1P59gain81270848311270864751
ENSG00000212451RNU11-4P9gain81276837671276838991
ENSG000002535309gain81275309431275345961
ENSG000002213519gain81298320401298321241
ENSG00000247844CCAT19gain8128220111128231333-1
ENSG000002721309gain521569864215701541
ENSG0000021607310gain119778379797783889-1
ENSG00000212856TTTY2B14gainY62742856292186-1
ENSG00000238235TSPY11P14gainY613463461373161
ENSG00000224075TTTY2213gainY963876296508541
ENSG00000197794IGKV7-39gain28921459789214894-1
ENSG00000254098IGKV2-269gain28949558489496317-1
ENSG00000253265IGKV2-149gain28937750689378280-1
ENSG00000244575IGKV1-279gain28951290889513413-1
ENSG00000166908PIP4K2C11gain1257984957579971981
ENSG00000123427METTL21B11gain1258165275581763241
ENSG00000135439AGAP211gain125811898058135940-1
ENSG00000175215CTDSP211gain125821371058240522-1
ENSG0000027003911gain1258197621581981981
ENSG0000025754111gain1258481675584871451
ENSG0000025823111gain1258937907592068421
ENSG00000212599RNU6-279P13gain125976283259762932-1
ENSG00000118596SLC16A713gain1259989848601763951
ENSG00000253814MRPS36P39gain81231037191231038481
ENSG00000204949FAM83A-AS19gain8124213412124214983-1
ENSG00000222607RNU6-628P9gain81242750831242751891
ENSG000002384229gain8124278882124278985-1
ENSG00000252297RNU6-875P9gain81243546541243547591
ENSG000002533369gain81243005951243027431
ENSG00000253868FER1L6-AS29gain8125058314125183763-1
ENSG00000104537ANXA139gain8124693034124749647-1
ENSG000002532279gain81252839241252898251
ENSG00000253885ARF1P39gain81251641641251646741
ENSG000002375869gain81253135561253140451
ENSG00000245149RNF139-AS19gain8125474726125486817-1
ENSG00000147684NDUFB99gain81255513441255807511
ENSG00000249816LINC009649gain81258609791259665701
ENSG00000170873MTSS19gain8125563031125740730-1
ENSG000002535439gain8127594876127595251-1
ENSG00000253167KIAA0196-AS19gain81260529261260572311
ENSG00000254166CASC199gain8128197880128215467-1
ENSG00000253970MTND2P79gain81347670541347676931
ENSG000002612209gain81345854261345861041
ENSG000002536279gain8135224108135332690-1
ENSG0000025376614gain521616371217796311
ENSG00000168967PMCHL110gain522142461221524651
ENSG0000023482613gain7117638912117644099-1
ENSG00000128534NAA3813gain71178240861178328781
ENSG0000023052010gain7118590440118591313-1
ENSG00000237069TTTY23B14gainY61104876111651-1
ENSG0000025020414gainY61113366113324-1
ENSG00000237563TTTY21B14gainY631147563151181
ENSG00000185700TTTY8B14gainY63388146341671-1
ENSG00000187657TSPY13P13gainY97432049745748-1
ENSG00000211592IGKC9gain28915667489157196-1
ENSG00000211593IGKJ59gain28916008089160117-1
ENSG00000225136PGBD4P59gain28922184489222269-1
ENSG00000241351IGKV3-119gain28932666889327228-1
ENSG00000253202IGKV3-259gain28949198889492240-1
ENSG00000232348LINC0027910gainY850633585128831
ENSG00000232419TTTY1910gainY857251385733241
ENSG00000212855TTTY213gainY957819395960851
ENSG00000231874TSPY18P13gainY970727397083901
ENSG00000239225TTTY2313gainY974840797495711
ENSG0000025127514gainY61098096111670-1
ENSG00000234830FAM197Y914gainY61243086131994-1
ENSG0000023509414gainY617408361759611
ENSG00000129816TTTY1B14gainY625847262796051
ENSG00000211596IGKJ29gain28916103789161074-1
ENSG00000211597IGKJ19gain28916139889161435-1
ENSG00000253435IGKV2-49gain28923118489231898-1
ENSG00000243466IGKV1-59gain28924681989247475-1
ENSG00000240671IGKV1-89gain28929192889292450-1
ENSG00000253497IGKV1-139gain28934549289345963-1
ENSG00000240864IGKV1-169gain28939935289399854-1
ENSG00000240382IGKV1-179gain28941683389417335-1
ENSG00000254157IGKV2-189gain28942820789428966-1
ENSG00000253732IGKV2-199gain28943445889434740-1
ENSG00000253625IGKV2-239gain28947150689472037-1
ENSG00000175189INHBC11gain1257828543578446111
ENSG0000025800111gain1257824899578277181
ENSG00000166986MARS11gain1257869228579113521
ENSG0000026543013gain125992195859922049-1
ENSG00000156787TBC1D319gain81240542081241643931
ENSG00000199678RNY4P59gain81240569571240570521
ENSG00000165156ZHX19gain8124260696124287781-1
ENSG00000254388DUTP29gain81243644211243648831
ENSG00000214814FER1L69gain81248642271251323021
ENSG000002531069gain81255007511255038841
ENSG00000206724RNU6-756P9gain81252728871252729931
ENSG000002217069gain8127153920127154003-1
ENSG00000224722PRNCR19gain8128098508128099755-1
ENSG00000253264PCAT29gain8128084939128094466-1
ENSG00000212993POU5F1B9gain81284265351284323111
ENSG00000136997MYC9gain81287476801287536741
ENSG00000207110RNU1-106P9gain81290113771290115401
ENSG000002542759gain8129417515129576925-1
ENSG000002532259gain81302632131302633841
ENSG000002435379gain81343382401343386471
ENSG000002536389gain8134404454134404933-1
ENSG00000066827ZFAT9gain8135490031135725292-1
ENSG000002534339gain81358503121358548801
ENSG000002512189gain81358621781358941421
ENSG000002496079gain523689036236894951
ENSG0000022222613gain71181025531181026481
ENSG0000027051610gain7118818231118819203-1
ENSG00000168757TSPY214gainY611426461170601
ENSG00000234583TSPY19P14gainY61719986173115-1
ENSG0000022837913gainY965092496551221
ENSG00000229208RBMY2NP13gainY96690279684305-1
ENSG00000211598IGKV4-19gain289184913891856691
ENSG00000253578IGKV1-229gain28947025989470696-1
ENSG00000243238IGKV2-309gain28954426489545079-1
ENSG00000123329ARHGAP911gain125786603857882597-1
ENSG00000111087GLI111gain1257853918578660451
ENSG00000252865RNU6-594P11gain1257904847579049181
ENSG00000175197DDIT311gain125791037157914300-1
ENSG00000208028MIR61611gain125791294657913042-1
ENSG00000166987MBD611gain1257914493579239311
ENSG00000155980KIF5A11gain1257943781579804151
ENSG00000240771ARHGEF2511gain1258003963580131621
ENSG00000178498DTX311gain1257998405580035871
ENSG00000135454B4GALNT111gain125801719358027138-1
ENSG00000135506OS911gain1258087738581153401
ENSG00000255737AGAP2-AS111gain1258120054581221391
ENSG00000135452TSPAN3111gain1258131796581439941
ENSG00000135446CDK411gain125814151058149796-1
ENSG0000024565111gain125826361858290265-1
ENSG0000025792111gain1258166811581808291
ENSG0000025769811gain125832531158329958-1
ENSG0000025715911gain1258360841583621821
ENSG00000139263LRIG311gain125926593159314303-1
ENSG0000025728811gain125944676159447965-1
ENSG0000025723013gain125991705959917965-1
ENSG00000202471RNU4-20P13gain125998057459980724-1
ENSG0000026672413gain125992184059921922-1
ENSG0000025714613gain126011347960113725-1
ENSG0000025729413gain1260486645604896321
ENSG0000025182213gain1260757603607577161
ENSG0000025786513gain1260812764608130741
ENSG00000243498UBA52P59gain81242490921242493021
ENSG00000207704MIR548D1,MIR548AA19gain81243602741243603701
ENSG00000181171FER1L6-AS19gain8124996378125053023-1
ENSG000002148039gain8125204912125259639-1
ENSG00000147687TATDN19gain8125500726125551699-1
ENSG00000263735MIR4662B,MIR4662A9gain8125834220125834300-1
ENSG000002535139gain8126009227126010440-1
ENSG00000180938ZNF5729gain81259855401259916311
ENSG00000104549SQLE9gain81260107391260345251
ENSG00000164961KIAA01969gain8126036502126104082-1
ENSG00000266452RN7SL590P9gain81264568071264570601
ENSG000002531119gain81264791811265536151
ENSG000002534709gain8126761299126762485-1
ENSG000002447919gain81273377401273417801
ENSG00000253438PCAT19gain81278593001280332591
ENSG000002539299gain81283515191284048761
ENSG00000221176MIR12079gain81290613981290614841
ENSG00000229140CCDC269gain8130363937130692485-1
ENSG00000263763MIR36869gain8130496303130496388-1
ENSG000002652199gain8130508758130508857-1
ENSG000002656879gain8130509216130509296-1
ENSG000002663879gain8130509833130509913-1
ENSG00000225259ST13P69gain81344202491344214711
ENSG00000008513ST3GAL19gain8134467091134584183-1
ENSG000002539169gain81347680881347688891
ENSG000002535619gain81347836521348267801
ENSG000002724569gain81357351901357361921
ENSG000002598209gain8135804263135810515-1
ENSG000002540289gain81358449901358467251
ENSG000002444139gain8135991070135991522-1
ENSG000002540839gain81362463741363119621
ENSG00000253819LINC011519gain8123682624123706345-1
ENSG000002389019gain81236835301236836331
ENSG000002634439gain8123712508123715662-1
ENSG000002351659gain81237815131237823891
ENSG000002723849gain8123792210123793069-1
ENSG000002215429gain8123858930123859018-1
ENSG00000147689FAM83A9gain81241912001242223141
ENSG000002534109gain81242051151242051721
ENSG00000156802ATAD29gain8124332090124428590-1
ENSG0000022161514gain521734320217344131
ENSG0000025310410gain52213935622141577-1
ENSG00000229643LINC0028014gainY62252606229454-1
ENSG0000023589514gainY63610176364798-1
ENSG00000232583GPR143P11gainY69687746974543-1
ENSG0000023002514gainY88397928842136-1
ENSG00000211595IGKJ39gain28916073389160770-1
ENSG00000211599IGKV5-29gain289196748891973001
ENSG00000243290IGKV1-129gain28933972189340242-1
ENSG00000241294IGKV2-249gain28947581289476644-1
ENSG0000026836711gain1257810198578105361
ENSG00000139269INHBE11gain1257846106578530631
ENSG00000264046RN7SL312P11gain1257907700579080231
ENSG0000025749911gain125811754458119448-1
ENSG00000135407AVIL11gain125819115958212487-1
ENSG0000026990311gain1258208277582087091
ENSG0000025725911gain125895974359175529-1
ENSG0000025821413gain125975999959804952-1
ENSG000002553259gain8123497754123502054-1
ENSG000002533729gain81238199851238287561
ENSG000002214619gain8124192551124192765-1
ENSG00000189376C8orf769gain8124232196124253638-1
ENSG000002532869gain81246264651246708101
ENSG000002540009gain8124936999124938173-1
ENSG000002724869gain81255918721255928891
ENSG000002719759gain8125318430125320617-1
ENSG000002550809gain8125847126125869758-1
ENSG00000156831NSMCE29gain81261039211263793621
ENSG00000173334TRIB19gain81264425631264506471
ENSG00000253651SOD1P39gain8126964105126964558-1
ENSG000002542279gain8127011238127013245-1
ENSG000002538419gain8127085290127085776-1
ENSG00000248720RFPL4AP59gain8127186430127187258-1
ENSG000002532209gain81275103941275125481
ENSG00000201782RN7SKP2269gain81292327501292330491
ENSG000002542869gain81275701201277256601
ENSG00000250400LINC009779gain8130228713130253496-1
ENSG000002539269gain81304281951304580981
ENSG000002531659gain8134787794134789595-1
ENSG00000248492ZFAT-AS19gain81356103141356129321
ENSG000002710489gain81356853741356857551
ENSG00000199153MIR30D9gain8135817119135817188-1
ENSG00000164256PRDM99gain523507264235287061
ENSG0000026369210gain7119124379119124463-1
ENSG0000024287914gainY617575161776281
ENSG00000147753TTTY714gainY631750963259471
ENSG00000147761TTTY7B13gainY95444339552871-1
ENSG00000228890TTTY2113gainY95552629558905-1
ENSG00000211594IGKJ49gain28916039889160434-1
ENSG00000243063IGKV3-79gain28927798789278600-1
ENSG00000253278IGKV2-109gain28931948989320183-1
ENSG00000211611IGKV6-219gain28945923589459850-1
ENSG00000244116IGKV2-289gain28952117989521942-1