Cell Line Synopsis
Cell Line Overview
Mutations
Copy Number Variation
Gene Expression
RNAi
Compound Sensitivity Profile
Similar Cell Lines

NCI-H2342 - Copy Number Variation - Cell Line Synopsis

External Data Sources:COSMIC - Cell Lines Project
Genome Average Copy Number: 3.66
Chromosome Average Copy Number: 3.65

Regions

Chromosome Genome Start Genome Stop Copy Number Signal
8312554122681loss
841281514068012no signal
8140691524792591loss
8247945627284790loss
8272851241046561loss
8410558344516200loss
8445249245799231loss
8457993453646680loss
8536528855838551loss
8558792356635570loss
8566807580180381loss
8801803981482895no signal
8814882385401896no signal
8854123391275167no signal
8913221095646006no signal
89566593112890532no signal
811290783124220081loss
812422572126204265no signal
812622494141681806no signal
814168648168674693no signal
816871877228920724no signal
822892300392306602no signal
839235604393979900loss
839398022468475352no signal
846863536489241484no signal
848924841615392222no signal
861539278650353763no signal
865049661707546752no signal
870754842727217983no signal
872722413750373014no signal
875038638865395222no signal
886539685947460493no signal
8947495651043858884no signal
81043864821072807623no signal
81072811891099081894no signal
81099123521144621745no signal
81144651561161577853no signal
81161622231169803966no signal
81169806281177503154no signal
81177510291192363976no signal
81192377771223791166no signal
81223792931230710248no signal
81230711741234878619gain
81234886371305802619gain
81305808301342159467no signal
81342160001342192778no signal
81342198181364486879gain
81364564511370087767no signal
81370105571387745144no signal
81387751001406492126no signal
81406495181406707138no signal
81406708531432477858no signal
81432481971462981567no signal

Genes

Ensembl Gene Gene Name(s) Copy Number Signal Chromosome Start Stop Strand
ENSG00000153317ASAP17no signal8131064353131455906-1
ENSG000002543139gain8134798336134798511-1
ENSG000002542586no signal8140472305140475259-1
ENSG00000147724FAM135B6no signal8139142266139509065-1
ENSG000002616558no signal8142363503142365465-1
ENSG000002532668no signal81420653891420706951
ENSG00000253605HNRNPA1P388no signal81424691751424701311
ENSG00000226807MROH58no signal8142443929142517330-1
ENSG00000265247MIR4472-17no signal81432577001432577791
ENSG000002617108no signal81431711881431729801
ENSG00000171045TSNARE17no signal8143293441143484601-1
ENSG00000130193THEM67no signal81438086211438183451
ENSG00000234616JRK7no signal8143738874143763386-1
ENSG00000180155LYNX17no signal8143845752143859640-1
ENSG00000126233SLURP17no signal8143822362143823829-1
ENSG000002537157no signal81438667901438935361
ENSG00000158106RHPN17no signal81444510571444663901
ENSG00000253421ZNHIT1P17no signal81439397701439402131
ENSG00000104524PYCRL7no signal8144686083144691943-1
ENSG000002543387no signal81444998491445013201
ENSG00000181085MAPK157no signal81447984291448046281
ENSG00000178685PARP107no signal8145051321145086940-1
ENSG00000178209PLEC7no signal8144989321145050902-1
ENSG00000160972PPP1R16A7no signal81457033521457275041
ENSG00000179632MAF17no signal81451594021451625141
ENSG000002568227no signal8145784429145784599-1
ENSG00000161016RPL87no signal8146015150146017972-1
ENSG000002545337no signal8145923999145924570-1
ENSG000002636407no signal81460787981460789071
ENSG000001997014no signal89572594395726040-1
ENSG000002534294no signal89572118095721472-1
ENSG000002541904no signal895602343956024871
ENSG000002439794no signal895903467959043351
ENSG000002539454no signal896416030964161221
ENSG000002542484no signal89608396096100152-1
ENSG00000156471PTDSS14no signal897273943973492231
ENSG000002540794no signal89696000996960461-1
ENSG00000202095RNU6-1172P4no signal89744328297443388-1
ENSG00000132541HRSP124no signal89911457299129469-1
ENSG00000180543TSPYL54no signal89828571798290176-1
ENSG00000252558RNU6-914P4no signal89920443399204541-1
ENSG00000104361NIPAL24no signal89920206199306621-1
ENSG000002534154no signal89991683199917899-1
ENSG00000240870RPL19P144no signal899794283997948561
ENSG000002377044no signal8100352533100353989-1
ENSG00000164924YWHAZ4no signal8101928753101965616-1
ENSG000002356834no signal81007081851007102451
ENSG000002539424no signal8102236169102236801-1
ENSG00000242315RN7SL685P4no signal81019701111019704061
ENSG000002536794no signal8102273769102275131-1
ENSG00000048392RRM2B4no signal8103216730103251346-1
ENSG000002532824no signal81022996731023060111
ENSG000002542814no signal81039910131040124121
ENSG00000236939C8orf564no signal8104145191104153703-1
ENSG00000155097ATP6V1C14no signal81040332911040852791
ENSG00000164932CTHRC14no signal81043837431043952251
ENSG000002538514no signal8104240653104241542-1
ENSG00000207399RNU6-1011P3no signal81043971891043972951
ENSG00000253228NRBF2P44no signal81089953441089961931
ENSG00000200806RNA5SP2754no signal81088967221088968391
ENSG00000164841TMEM744no signal8109619079109799844-1
ENSG000002531035no signal8112111190112248432-1
ENSG000002531075no signal81115676371115687471
ENSG00000120526NUDCD15no signal8110253148110346614-1
ENSG000002647945no signal81134878301134879151
ENSG000002533986no signal8120432150120474590-1
ENSG00000177570SAMD126no signal8119201698119634234-1
ENSG000002536196no signal81219253051221319941
ENSG00000201896RN7SKP1536no signal8120724070120724385-1
ENSG00000170961HAS28no signal8122624356122653630-1
ENSG00000178764ZHX29gain81237936331239867501
ENSG000002484788no signal81226913661227198711
ENSG00000136986DERL19gain8124025404124054663-1
ENSG000002536079gain81240148001240429911
ENSG000002541139gain8124575310124581002-1
ENSG00000259305ZHX1-C8ORF769gain8124238431124279627-1
ENSG00000251840RN7SKP1559gain81246009991246012861
ENSG00000183665TRMT129gain81254630481254743911
ENSG000002507279gain81251541291251557531
ENSG00000242170RN7SL329P9gain81262828461262831421
ENSG000002504289gain81259326701259343181
ENSG000002544319gain8126360438126363658-1
ENSG00000168672FAM84B9gain8127564687127570638-1
ENSG000002534279gain81274864341275048411
ENSG000002715099gain81283044781283046851
ENSG000002540109gain81275691411275696781
ENSG00000249375CASC119gain8128698588128746213-1
ENSG00000222501RNU4-25P9gain8129022628129022857-1
ENSG00000249859PVT19gain81288067791291134991
ENSG00000221261MIR12089gain81291623621291624341
ENSG00000253043RNU7-181P7no signal8131016774131016847-1
ENSG000002542637no signal81309027111309140041
ENSG00000253117OC907no signal8133036467133071627-1
ENSG000002508692no signal86804578968048146-1
ENSG000002691973no signal870850403708506351
ENSG00000165084C8orf342no signal869242957697312571
ENSG00000247570SDCBPP23no signal870855183708568831
ENSG000002531433no signal87138334771392858-1
ENSG00000213003BTF3P123no signal871185604711860721
ENSG000002533793no signal87231567572504260-1
ENSG000002463663no signal871520812715755141
ENSG000002542773no signal872587535726150211
ENSG000002537844no signal87378709473793975-1
ENSG000002543474no signal873374546733832071
ENSG00000040341STAU24no signal87433260474659943-1
ENSG000002608384no signal873859385738626801
ENSG000002724694no signal87474601074746277-1
ENSG000002545384no signal874582676746451321
ENSG00000244295RPS20P214no signal874894360748947021
ENSG000002537772no signal87571652275717046-1
ENSG00000104369JPH12no signal87514693575233563-1
ENSG000002540432no signal87580338675808537-1
ENSG00000164751PEX22no signal87789249477913280-1
ENSG000002542382no signal87593866375941695-1
ENSG000002533912no signal880432380804328841
ENSG000002543662no signal878311308784495261
ENSG00000104435STMN22no signal880523049805784101
ENSG00000188856RPSAP472no signal881471105814719921
ENSG000002417462no signal88117776381178390-1
ENSG00000243424RN7SL107P2no signal88152577981526061-1
ENSG000002537602no signal88148028581480741-1
ENSG00000237264FTH1P112no signal88243391782434467-1
ENSG000002533342no signal882704058827279491
ENSG00000253598SLC10A52no signal88260584282608409-1
ENSG000002538982no signal884315993843211351
ENSG00000104497SNX162no signal88271181682755101-1
ENSG000002489782no signal88574080885741714-1
ENSG000002531372no signal885591033855920771
ENSG00000203413ACTBP62no signal885860820858619091
ENSG00000133739LRRCC12no signal886019382860583111
ENSG000002532832no signal885998850859994211
ENSG00000104267CA22no signal886376081863937221
ENSG000002535492no signal88635408086377144-1
ENSG000002543802no signal886436128864527401
ENSG00000271381REXO1L9P3no signal88677508786776836-1
ENSG00000270416REXO1L12P3no signal886726454867281131
ENSG000002437613no signal887055331870557361
ENSG00000270375REXO1L2P3no signal88683913186840877-1
ENSG000002534013no signal88858782688588736-1
ENSG00000176571CNBD13no signal887878670886274471
ENSG00000248231KRT8P43no signal89042485090427300-1
ENSG00000253394LINC005343no signal891233716915815461
ENSG00000104327CALB13no signal89107083691107703-1
ENSG000002542193no signal89205491892056990-1
ENSG000002651573no signal89147555591475604-1
ENSG00000155100OTUD6B3no signal892082424920993231
ENSG00000200151RN7SKP2313no signal892607193926074691
ENSG00000266194MIR46613no signal892217713922177871
ENSG000002211723no signal893647563936476931
ENSG00000253781ZNF317P13no signal894658294946593201
ENSG00000205133TRIQK3no signal89389575894029901-1
ENSG00000212998RBM12B-AS14no signal894752349947530011
ENSG00000188343FAM92A13no signal894710789947437551
ENSG00000164953TMEM674no signal894767072948314621
ENSG00000244217RPS4XP104no signal895365151953658811
ENSG000002543874no signal894861789948623031
ENSG00000265817FSBP4no signal89539060595449180-1
ENSG00000253393RANP92no signal832897041328973111
ENSG000002531232no signal83718819037189502-1
ENSG00000219491TPT1P82no signal836746000367468251
ENSG000002531612no signal83727885937411701-1
ENSG000001831542no signal83759227937594944-1
ENSG000002542902no signal83745499837457376-1
ENSG00000187840EIF4EBP12no signal837887859379178831
ENSG00000020181GPR1242no signal837641709377024141
ENSG00000253570RNF5P12no signal83845817938458718-1
ENSG000002645782no signal84146721141479021-1
ENSG00000168615ADAM92no signal838854388389626631
ENSG000002541312no signal842342118423425371
ENSG00000070501POLB2no signal842195972422293261
ENSG00000147432CHRNB32no signal842552519425925501
ENSG000002640942no signal84322185643221930-1
ENSG000002533122no signal843106854431070011
ENSG00000254156MTND6P204no signal847750410477508271
ENSG00000222630RN7SKP412no signal843236787432370911
ENSG000002538034no signal84778252447783667-1
ENSG00000252710RNU6-295P2no signal84922048749220590-1
ENSG000002533304no signal84842359648424703-1
ENSG000002538922no signal84956982049571454-1
ENSG000002536082no signal849464127496110691
ENSG000002534742no signal850081098501414841
ENSG000002534842no signal85073014650733504-1
ENSG000002532062no signal85044894550466973-1
ENSG000002533402no signal851772090517726221
ENSG000002536682no signal854625257546254561
ENSG000002533692no signal85430777154308506-1
ENSG000002013162no signal851927581519277251
ENSG00000199212RNU105C2no signal855243247552434551
ENSG000002702752no signal85539215755392523-1
ENSG00000244107RN7SL250P2no signal855333028553333381
ENSG000002215892no signal85658979256589883-1
ENSG00000104237RP12no signal855528627555433941
ENSG000002717222no signal856926046569267271
ENSG00000248578NPM1P212no signal85701375857014826-1
ENSG00000008988RPS202no signal85697985456987069-1
ENSG00000104331IMPAD12no signal85787049257906403-1
ENSG00000170791CHCHD72no signal857124245571313571
ENSG000002052932no signal858890917588966851
ENSG000002541392no signal858658708586627581
ENSG000002532812no signal85916833059184678-1
ENSG00000201763RNA5SP2672no signal860368444603685691
ENSG00000137575SDCBP2no signal859465483594954191
ENSG00000254954SLC2A13P12no signal861054380610547011
ENSG000002547752no signal860962146609872741
ENSG000002544323no signal86172129461722165-1
ENSG000002548023no signal86187836161880334-1
ENSG000002547773no signal861822612618791161
ENSG000002535443no signal86282254362823361-1
ENSG000002537343no signal864681988646980581
ENSG00000137563GGH3no signal86392763863951730-1
ENSG00000147570DNAJC5B2no signal866933795670127511
ENSG00000104442ARMC12no signal86651469466546442-1
ENSG00000253138LINC009672no signal867104328671095501
ENSG00000169085C8orf462no signal867372238674307591
ENSG000002461452no signal86733182467341212-1
ENSG00000206949RNU6-1324P2no signal86741344067413546-1
ENSG00000178460MCMDC22no signal867782984678342831
ENSG00000104205SGK32no signal867624653677742571
ENSG00000213865C8orf442no signal867579850675977991
ENSG00000121022COPS52no signal86795531467996018-1
ENSG000002419612no signal868318750683193071
ENSG00000253958CLDN237no signal8855944885616161
ENSG000002541536no signal883144198318847-1
ENSG000002485387no signal8904652190603641
ENSG000002072447no signal8881908588192181
ENSG000002722676no signal894126569414030-1
ENSG000002542376no signal892294809293715-1
ENSG000002384962no signal897892309789333-1
ENSG000002536976no signal895158059515948-1
ENSG000002614512no signal810291182102958221
ENSG00000177710SLC35G52no signal811188397111897171
ENSG00000236827LINC005292no signal81110513511125374-1
ENSG00000079459FDFT11loss811653082116968181
ENSG00000136574GATA41loss811534468116175111
ENSG000002545071loss81186090911861591-1
ENSG00000206014OR7E161P1loss81178610111787072-1
ENSG00000255544DEFB108P31loss81195268511957045-1
ENSG000002666371loss812038198120382631
ENSG00000223443USP17L21loss81199467711996586-1
ENSG00000242607RPS3AP345no signal81242785912428639-1
ENSG000002658261loss812280513122805781
ENSG000002383235no signal812493613124937611
ENSG000002554576no signal813553083135630151
ENSG00000250305KIAA14566no signal812803151128890121
ENSG000002539513no signal816133190161338051
ENSG000002544256no signal81376674013767289-1
ENSG00000198791CNOT74no signal81708673717104387-1
ENSG00000104763ASAH14no signal81791393417942494-1
ENSG00000104760FGL14no signal81772188917767874-1
ENSG000002011574no signal818837129188372821
ENSG000002716544no signal81824461818245287-1
ENSG000002542424no signal818949243189725341
ENSG000002610264no signal82253652622541522-1
ENSG00000168476REEP44no signal82199553321999464-1
ENSG00000179388EGR34no signal82254517222550815-1
ENSG000002487384no signal822735485227455351
ENSG000002531254no signal822547663226561291
ENSG000002161232no signal82362606923626158-1
ENSG000002461302no signal822925742229411321
ENSG00000241811RN7SL651P2no signal82503894625039235-1
ENSG000002711182no signal82366344623663667-1
ENSG000002541782no signal82569164525697651-1
ENSG00000104765BNIP3L2no signal826240414263631521
ENSG00000221818EBF22no signal82569924625902913-1
ENSG000002534302no signal826280109262814451
ENSG00000120907ADRA1A2no signal82660566726724790-1
ENSG000002532082no signal826405185264059791
ENSG000002538992no signal82692151326922795-1
ENSG000002405192no signal826629307266296571
ENSG000002216232no signal827005221270053091
ENSG00000168077SCARA32no signal827491385275342931
ENSG00000104228TRIM352no signal82714240427168836-1
ENSG000002535672no signal828304781283134191
ENSG00000265847MIR42872no signal82774355627743633-1
ENSG000002541292no signal828968090289982461
ENSG00000104299INTS92no signal82862517828747759-1
ENSG00000253279FAM183CP2no signal829779029298112401
ENSG000002540862no signal829722160297291771
ENSG000002210032no signal829786121297862051
ENSG000002540952no signal831196713312039951
ENSG00000104687GSR2no signal83053558330585443-1
ENSG00000222468RNA5SP2612no signal83145561531455720-1
ENSG000002532752no signal831354939313561281
ENSG00000200246RNA5SP2632no signal832114012321141391
ENSG00000254384MTND6P192no signal836136478361370011
ENSG000002541041loss82143152146721
ENSG00000182372CLN81loss8170394417347381
ENSG000002607212no signal813168081317999-1
ENSG00000253696KBTBD11-OT11loss8191956319246441
ENSG00000183117CSMD11loss827928754852494-1
ENSG00000036448MYOM21loss8199315521134751
ENSG000002531891loss858939555894496-1
ENSG000002712480loss853127405313187-1
ENSG000002460891loss862610726264663-1
ENSG00000239839DEFA31loss868733916875823-1
ENSG00000240247DEFA1B1loss868542886875778-1
ENSG00000214268RPS3AP331loss870484237049085-1
ENSG00000206042DEFA7P1loss868960936896961-1
ENSG00000177243DEFB103B1loss872864107287870-1
ENSG00000177306OR7E125P1loss871042487105874-1
ENSG000002161941loss8731547873155721
ENSG00000198129DEFB107B1loss8735336873668331
ENSG00000186599DEFB105B1loss8734519173471151
ENSG00000248944FAM90A6P1loss874065757409584-1
ENSG00000215356ZNF705B1loss8778385978122711
ENSG00000229477FAM90A16P1loss8758826175912711
ENSG000002543111loss879742677974471-1
ENSG00000221305MIR548I31loss879464637946611-1
ENSG000002689555no signal880461588046331-1
ENSG000002660969gain8130508468130508569-1
ENSG000002646809gain8130509594130509674-1
ENSG000002537207no signal81309521021309616401
ENSG00000165071TMEM717no signal8133697253133772958-1
ENSG000002701377no signal81338384241338391481
ENSG00000270132WISP1-OT19gain81342412991342419401
ENSG000002535939gain81348987391349146501
ENSG000002712409gain8134975235134975502-1
ENSG00000131773KHDRBS37no signal81364697001366689651
ENSG000002541014no signal81375430411379971781
ENSG000002535748no signal81409234821409288641
ENSG00000169398PTK28no signal8141667999142012315-1
ENSG00000254324MIR151A8no signal8141742663141742752-1
ENSG00000105339DENND38no signal81421273771422059071
ENSG000002388548no signal81424575751424576491
ENSG000002541838no signal8143049452143050202-1
ENSG00000181790BAI17no signal81435307911436263701
ENSG00000167653PSCA7no signal81437517261437641421
ENSG000002538067no signal8143808701143809108-1
ENSG00000160882CYP11B17no signal8143953772143961262-1
ENSG00000182851GPIHBP17no signal81442950681442990441
ENSG00000181638ZFP417no signal81443289911443448751
ENSG00000250571GLI47no signal81443496031443591011
ENSG000002721727no signal8144372569144372791-1
ENSG000002636607no signal81443970911443971761
ENSG000002541447no signal81446242801446245701
ENSG00000104518GSDMD7no signal81446353771446452321
ENSG00000181135ZNF7077no signal81447666221447960681
ENSG000002545747no signal8144791177144795754-1
ENSG00000180921FAM83H7no signal8144806103144815971-1
ENSG00000180900SCRIB7no signal8144873090144897549-1
ENSG000002553437no signal8144915440144916233-1
ENSG00000186583SPATC17no signal81450865821451019331
ENSG000002047917no signal81451040301451064231
ENSG00000227473TSSK5P17no signal8145196117145198567-1
ENSG000002652957no signal81457926911457927761
ENSG00000196922ZNF252P7no signal8146198975146228281-1
ENSG00000182307C8orf337no signal81462777641462814161
ENSG00000214954LRRC693no signal892114060922314641
ENSG00000079102RUNX1T13no signal89296720393115514-1
ENSG000002531183no signal89336414093364376-1
ENSG000002537493no signal89343307893434026-1
ENSG000002540893no signal894271895943102041
ENSG000002719713no signal89472760694728341-1
ENSG000002535854no signal89510999295116550-1
ENSG000002537044no signal895565950955819731
ENSG000002701314no signal89715280097153172-1
ENSG000002542244no signal897247655972502621
ENSG00000104324CPQ4no signal897657455981618821
ENSG000002708614no signal89886524998865481-1
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