Cell Line Synopsis
Cell Line Overview
Mutations
Copy Number Variation
Gene Expression
RNAi
Compound Sensitivity Profile
Similar Cell Lines

NCI-H2342 - Copy Number Variation - Cell Line Synopsis

External Data Sources:COSMIC - Cell Lines Project
Genome Average Copy Number: 3.66
Chromosome Average Copy Number: 2.54

Regions

Chromosome Genome Start Genome Stop Copy Number Signal
426022875495906572no signal
449620886496586130loss
452685700526891166no signal
452689423562483504no signal
456249201587500425no signal
458750817849470104no signal
484947624852312272no signal
412282688221loss
468911689115no signal
469521101967614no signal
410198628110534533no signal
411054542240433242no signal
424044961260225793no signal
485232029854291114no signal
4854368691153114844no signal
41153160711189343324no signal
41189400521227861484no signal
41227923921538784801loss
41538791541553552152no signal
41553558041837453211loss
41837464871859578172no signal
41859583251892232171loss
41892232911910279242no signal

Genes

Ensembl Gene Gene Name(s) Copy Number Signal Chromosome Start Stop Strand
ENSG00000241652RN7SL253P1loss41740627941740630871
ENSG000002499451loss4176379440176387848-1
ENSG000002641301loss4176959234176959339-1
ENSG000002491061loss41767114581767333401
ENSG000002490081loss4178163693178169927-1
ENSG000002489801loss4177229419177241609-1
ENSG00000251504LINC010991loss4178650792178829090-1
ENSG000002490841loss4178264158178278186-1
ENSG00000253000RNU1-45P1loss4179037875179038015-1
ENSG000002509931loss4180310288180386459-1
ENSG000002508391loss41799905911799907481
ENSG00000251742RN7SKP131loss4182756018182756261-1
ENSG000002253561loss41824438131824441541
ENSG000002514331loss4182826943182827620-1
ENSG00000252343RNU2-34P1loss41834698121834699321
ENSG00000221227MIR13051loss41830904461830905311
ENSG000002383192no signal4184195614184195717-1
ENSG00000129187DCTD2no signal4183811213183839089-1
ENSG00000168564CDKN2AIP2no signal41843657441843693511
ENSG000002385962no signal41842504511842505541
ENSG000002485172no signal41859101511859263401
ENSG000002496791loss41863926701863934171
ENSG00000164323KIAA14301loss4186080819186130658-1
ENSG00000154556SORBS21loss4186506598186877806-1
ENSG00000154553PDLIM31loss4186422851186456766-1
ENSG00000164344KLKB11loss41871301331871796251
ENSG000002497421loss4187900644187943127-1
ENSG00000088926F111loss41871870991872108351
ENSG000002516431loss4188362831188365452-1
ENSG000002133311loss41888914271888924381
ENSG000002496421loss41885349191885815231
ENSG000002410111loss41890277121890280681
ENSG00000179059ZFP421loss41889169251889262041
ENSG000002505232no signal41895520781895529011
ENSG000002456852no signal4190701490190861426-1
ENSG000002725662no signal4190625035190625644-1
ENSG00000250537DUX4L82no signal41909887961909904061
ENSG00000251297TUBB7P2no signal4190903678190906026-1
ENSG00000259128DUX4L22no signal41910118601910137191
ENSG00000259034DUX4L32no signal41910085601910103701
ENSG00000250033SLC7A11-AS11loss41389786181390993311
ENSG000002389711loss4139732832139732920-1
ENSG00000109390NDUFC11loss4140188034140223705-1
ENSG00000151014CCRN4L1loss41399369431399669061
ENSG00000153132CLGN1loss4141309609141349122-1
ENSG00000201533RN7SKP2371loss4140606281140606581-1
ENSG000002053011loss4141363416141419531-1
ENSG000002513001loss41439662391439670311
ENSG000002501891loss41423263261423287401
ENSG000002503451loss4144681552144683246-1
ENSG000002464481loss41446214101447862251
ENSG000002514521loss4145841865145842316-1
ENSG000002504061loss41457727241457959391
ENSG00000251254GTF2F2P11loss41484272431484279171
ENSG00000225176ATP5LP41loss4149624678149624984-1
ENSG00000201846RNA5SP1661loss41494790991494792001
ENSG000002507061loss4153067537153099725-1
ENSG000002348281loss4150273169150817385-1
ENSG000002485711loss41535875201535912591
ENSG000002523751loss41538221181538222311
ENSG00000164144ARFIP11loss41537010891538396151
ENSG000002492002no signal41552950381552954991
ENSG00000109654TRIM22no signal41540734941542604721
ENSG00000200350RNU6-1285P1loss4155465085155465189-1
ENSG00000171566PLRG11loss4155456158155471587-1
ENSG000002490411loss4155675908155703025-1
ENSG00000185149NPY2R1loss41561297811561382301
ENSG000002496921loss41556917201556920681
ENSG00000248548MTND4P81loss4156376202156377563-1
ENSG00000164114MAP91loss4156263810156298122-1
ENSG000002493861loss4156380022156380715-1
ENSG000002506221loss41578937831578941081
ENSG00000061918GUCY1B31loss41566801441567287431
ENSG000002525241loss41579857091579858151
ENSG00000164124TMEM1441loss41591227561591765631
ENSG00000164125FAM198B1loss4159045626159094470-1
ENSG00000052795FNIP21loss41596902901598292011
ENSG00000171503ETFDH1loss41595932771596307751
ENSG000002495681loss41623001051623095691
ENSG000002485521loss4160296251160296474-1
ENSG00000164128NPY1R1loss4164245113164265984-1
ENSG00000151005TKTL21loss4164392257164395047-1
ENSG00000227283RPL35AP121loss41643033311643036681
ENSG00000201050RNU6-668P1loss41657084421657085481
ENSG00000223037RNU6-284P1loss41655418841655419891
ENSG00000221891FAM218BP1loss4165850646165851103-1
ENSG000002486321loss4165889739165891154-1
ENSG00000250486FAM218A1loss41658781001658802731
ENSG00000229894GK3P1loss4166198944166201175-1
ENSG000002730971loss4165991760165992156-1
ENSG00000251596HADHAP11loss4166325219166327502-1
ENSG00000212373RNA5SP1711loss4167839515167839629-1
ENSG000002662541loss41671489171671489841
ENSG000002071711loss41693925601693926901
ENSG000002387441loss41692318431692319461
ENSG00000145439CBR41loss4169784921169931426-1
ENSG00000206613RNU6-1336P1loss4169607759169607867-1
ENSG00000109572CLCN31loss41705337841706448241
ENSG00000229204PTGES3P31loss4170712371170712853-1
ENSG00000056050C4orf271loss4170650616170679104-1
ENSG00000181359HSP90AA6P1loss4171502621171526601-1
ENSG000002511761loss4172474151172485418-1
ENSG000002499431loss4171735490171735699-1
ENSG000002507601loss4175460340175461406-1
ENSG000002512854no signal48914172189144989-1
ENSG00000207524RNU6-33P4no signal48960599989606105-1
ENSG000002499514no signal495596396956237211
ENSG00000251449MTND1P194no signal493623496936238101
ENSG00000200622RNU6-1059P4no signal49678981896789915-1
ENSG00000163114PDHA24no signal496761239967626251
ENSG00000251620STPG2-AS14no signal498288077984113151
ENSG000002639234no signal499850048999161451
ENSG000002606414no signal499580055995857011
ENSG00000196616ADH1B4no signal4100226121100242558-1
ENSG00000214886FAM177A1P14no signal499877133998779181
ENSG000002487134no signal4100557686100575805-1
ENSG00000196344ADH74no signal4100333418100356894-1
ENSG000002504034no signal4100911894100912634-1
ENSG00000138814PPP3CA4no signal4101944566102269435-1
ENSG000002488204no signal4100962998100963261-1
ENSG000002513094no signal4102898051102958060-1
ENSG000002545314no signal41022689371022700401
ENSG00000230069LRRC37A15P4no signal4103648431103651878-1
ENSG000002509204no signal4104472084104480284-1
ENSG00000138778CENPE4no signal4104026963104119566-1
ENSG000002505224no signal4106461347106473512-1
ENSG000002164254no signal4106447753106448554-1
ENSG00000247950SEC24B-AS14no signal4110268631110354973-1
ENSG00000138795LEF14no signal4108968701109090112-1
ENSG00000243227RN7SL55P4no signal4110371931110372224-1
ENSG00000249681KRT19P34no signal4110800226110801053-1
ENSG000002727954no signal4110736203110736566-1
ENSG000002501034no signal4111516671111536614-1
ENSG000001998944no signal4111354265111354344-1
ENSG000002484324no signal4112725574112730850-1
ENSG00000248633WRBP14no signal4113614615113614948-1
ENSG00000251441RTEL1P14no signal41132772911132809751
ENSG000002502294no signal41147612061147613921
ENSG00000250215CIR1P24no signal4115634735115636076-1
ENSG00000174607UGT84no signal41155196111155993801
ENSG00000250627TTC39CP14no signal4117115153117115907-1
ENSG00000250693RPF2P24no signal41165499681165508631
ENSG00000213492NT5C3AP14no signal4118495667118497329-1
ENSG000002459584no signal41203759461204731801
ENSG000002490024no signal41199271871199275561
ENSG000002509384no signal41209881131213379211
ENSG000002005534no signal41208682861208683871
ENSG00000173376NDNF4no signal4121956768121994176-1
ENSG00000251609SETP124no signal4121816649121818238-1
ENSG000002440831loss4123736926123737272-1
ENSG00000249464LINC010911loss41245714221248515611
ENSG00000164056SPRY11loss41243179501243249101
ENSG000002516491loss41269918631269931591
ENSG000002012971loss41262839741262840841
ENSG000002484911loss4128018046128391724-1
ENSG00000142731PLK41loss41288020161288203501
ENSG000002482091loss41284146601284149831
ENSG000002513451loss41300542611300552531
ENSG000002488021loss4129504154129522562-1
ENSG000002512281loss41358654301358656781
ENSG000002515551loss4132851186132897107-1
ENSG000002501441loss41359666191359680051
ENSG00000207188RNU6-569P1loss4136236573136236677-1
ENSG000002484341loss41359883881360188131
ENSG00000250813SERF1AP11loss4138222155138222341-1
ENSG00000248104TARS2P11loss4136486272136488312-1
ENSG00000189184PCDH181loss4138440072138453648-1
ENSG00000248397LINC004981loss4139220010139233812-1
ENSG000001999014no signal453652704536528051
ENSG000002493414no signal454525375546033231
ENSG000002512644no signal45530666955312890-1
ENSG000002485184no signal455242169552429191
ENSG000002497274no signal45570232755711568-1
ENSG00000128050PAICS5no signal457301907573275341
ENSG00000252489RNU6-197P5no signal45715465157154750-1
ENSG00000231442LARP1BP14no signal464215832642171901
ENSG00000201775RNU6-1325P4no signal460699781606998851
ENSG000002446694no signal46563284865633615-1
ENSG000002514304no signal465472136654723311
ENSG00000033178UBA64no signal46847837068566897-1
ENSG00000145242EPHA54no signal46618528166536213-1
ENSG000002702574no signal468503895685040771
ENSG000002500264no signal46904980269093787-1
ENSG00000250656ST3GAL1P14no signal46858209368583106-1
ENSG000002511014no signal46948111169481855-1
ENSG00000162840MT2P14no signal469242041692422261
ENSG00000109181UGT2B104no signal469681711696969141
ENSG00000135220UGT2A34no signal46979418169817509-1
ENSG000002492354no signal46972705069727328-1
ENSG00000156096UGT2B44no signal47034588370391732-1
ENSG000002497634no signal470108346701165331
ENSG00000270386UGT2A14no signal47045491270518967-1
ENSG00000248886UGT2A3P74no signal47038338570384118-1
ENSG00000135222CSN24no signal47082097470826725-1
ENSG00000132463GRSF14no signal47168149971705662-1
ENSG00000207448RNU6-520P4no signal471567472715675751
ENSG000002485674no signal47268702272689697-1
ENSG00000080493SLC4A44no signal472053003724378041
ENSG000002216394no signal474129677741298011
ENSG00000250550PPBPP14no signal474713583747145461
ENSG000002499704no signal474409539744097301
ENSG000002695594no signal47502332775024085-1
ENSG000002602654no signal47600691276009927-1
ENSG000002481654no signal47591908775960034-1
ENSG00000138769CDKL24no signal47650321576555900-1
ENSG00000174792C4orf264no signal476481258764910951
ENSG000002016444no signal47658730576587397-1
ENSG00000169248CXCL114no signal47695483576962568-1
ENSG000002687884no signal476871883768785261
ENSG00000214062RPL7P174no signal47800355678004279-1
ENSG00000118804FAM47E-STBD14no signal477172886772327521
ENSG00000248640HNRNPA1P564no signal47890901478909967-1
ENSG00000201641RNU6-1187P4no signal47807148178071590-1
ENSG00000248117MINOS1P44no signal479300351793006681
ENSG00000242175RN7SL127P4no signal479820009798203061
ENSG00000251442LINC010944no signal479567057796038531
ENSG000002510594no signal482086094821145491
ENSG000002365304no signal481000686810022761
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ENSG00000189308LIN544no signal48383112683934079-1
ENSG00000251022THAP9-AS14no signal48381416283822113-1
ENSG00000239525RPL30P54no signal484423852844241871
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ENSG00000258013RPL3P134no signal48546545785465672-1
ENSG00000163629PTPN134no signal487515468877363241
ENSG000002733894no signal48692148086921919-1
ENSG00000118762PKD24no signal488928820889989291
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ENSG00000201707RNU6-818P4no signal489122855891229621
ENSG00000138646HERC54no signal489378268894273141
ENSG000002699084no signal4624116862416641
ENSG00000249104USP17L174no signal4924560592471971
ENSG00000250231USP17L16P4no signal4924085692424481
ENSG00000215323OR7E84P4no signal4947074694716941
ENSG00000229579USP17L264no signal4933638493379761
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ENSG00000222182RNA5SP1562no signal41141567511415784-1
ENSG00000002587HS3ST12no signal41139477411431389-1
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ENSG00000163145C1QTNF72no signal415341442154477901
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ENSG00000207732MIR218-12no signal420529898205300071
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ENSG000002494532no signal423781213237841831
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ENSG00000238632RNU7-126P3no signal42560018625600247-1
ENSG000002611213no signal424661479246731911
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ENSG000002497662no signal433402160334023011
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ENSG00000250254PTTG22no signal437962056379627461
ENSG000002492072no signal43911429739128438-1
ENSG00000197712FAM114A12no signal438869298389473601
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ENSG00000074966TXK2no signal44806841048136273-1
ENSG00000145248SLC10A42no signal448485360484912131
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ENSG000002511884no signal4262771263320-1
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ENSG00000164104HMGB21loss4174252846174256276-1
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ENSG00000145451GLRA31loss4175558065175750465-1
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ENSG000002485511loss4176267509176324261-1
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ENSG00000150627WDR171loss41769869851771039781
ENSG000002015161loss41770193141770194361
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ENSG00000145390USP534no signal41201337421202166721
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ENSG000002212454no signal41204908541204909801
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