Cell Line Synopsis
Cell Line Overview
Mutations
Copy Number Variation
Gene Expression
RNAi
Compound Sensitivity Profile
Similar Cell Lines

NCI-H2342 - Copy Number Variation - Cell Line Synopsis

External Data Sources:COSMIC - Cell Lines Project
Genome Average Copy Number: 3.66
Chromosome Average Copy Number: 3.51

Regions

Chromosome Genome Start Genome Stop Copy Number Signal
1319026950261755083no signal
1326175997352263815no signal
1335227874597612575no signal
1359761371605420966no signal
1360543433621737795no signal
1362175137760514061loss
1376052329861046723no signal
1386105247883560025no signal
1388357815902402283no signal
1390241780904575441loss
13904600651151083983no signal

Genes

Ensembl Gene Gene Name(s) Copy Number Signal Chromosome Start Stop Strand
ENSG00000165621OXGR13no signal139763797397646984-1
ENSG00000243300LINC003593no signal139759353597636426-1
ENSG00000202290RNA5SP373no signal139801522698015355-1
ENSG00000233124LINC004563no signal139782472397831876-1
ENSG00000233291RPL7AP613no signal1398553907985545421
ENSG000002384073no signal1398538063985381661
ENSG00000152767FARP13no signal1398794816991020271
ENSG00000263399MIR31703no signal1398860778988608541
ENSG00000222969RN7SKP83no signal139885608998856446-1
ENSG000002691893no signal1398885904988869541
ENSG00000088386SLC15A13no signal139933605599404908-1
ENSG000002695993no signal139898190998985490-1
ENSG00000043355ZIC23no signal131006340261006390181
ENSG00000234168LINC010393no signal131002293661002326221
ENSG00000134864GGACT3no signal13101183810101241782-1
ENSG00000102466FGF143no signal13102372134103054124-1
ENSG00000234354RPS26P473no signal13101192089101192528-1
ENSG00000229975LIPT1P13no signal131026544751026556601
ENSG00000134884ARGLU13no signal13107194021107220512-1
ENSG00000222301RNY5P83no signal131034723431034724191
ENSG00000139826ABHD133no signal131088707271088866031
ENSG000001967773no signal13107594562107594907-1
ENSG00000234854LINC006763no signal131103806291103823541
ENSG00000223617LINC003703no signal131099343211099400811
ENSG000002649893no signal13112563079112563148-1
ENSG000002558313no signal131112915551112923401
ENSG00000260102LINC010703no signal131128516641128553141
ENSG00000068650ATP11A3no signal131133446431135414821
ENSG00000153498SPACA73no signal131130306331130890031
ENSG000002678683no signal13113619149113620445-1
ENSG000002647263no signal13113372159113372228-1
ENSG000002693763no signal131136639851136646331
ENSG00000185896LAMP13no signal131139515561139779871
ENSG00000139842CUL4A3no signal131138625521139193991
ENSG000002640425no signal1342024148420242351
ENSG00000172766NAA165no signal1341885341419511661
ENSG000002530515no signal134591044945910582-1
ENSG00000238189ENOX1-AS25no signal1344032601440332591
ENSG00000215475SIAH35no signal134635440546425871-1
ENSG00000227848SUCLA2-AS15no signal1348575525485766881
ENSG00000229423RPL27AP85no signal134834077548341220-1
ENSG000002223915no signal134932622549326292-1
ENSG00000139679LPAR65no signal134896370749018840-1
ENSG00000136169SETDB25no signal1350018429500691381
ENSG00000150510FAM124A5no signal1351796503518583771
ENSG00000214359RPL18P105no signal1350673467506740041
ENSG00000266611MIR47035no signal1352126725521268031
ENSG00000253309SERPINE35no signal1351909909519388711
ENSG00000102796DHRS125no signal135234212952378293-1
ENSG00000224451ATP5F1P15no signal1352172552521735961
ENSG00000253710ALG115no signal1352586534526038001
ENSG00000136100VPS365no signal135298673753024763-1
ENSG000002175765no signal135274184452865692-1
ENSG00000211579MIR7595no signal1353384179533842741
ENSG00000139675HNRNPA1L25no signal1353191605532179191
ENSG000002209905no signal135394198053942091-1
ENSG00000204918PRR20B5no signal1357721622577246431
ENSG00000261517LINC005585no signal1354389554544502541
ENSG00000214335CTAGE16P5no signal1359102749591051601
ENSG00000230009MTCO2P35no signal1357778513577789331
ENSG00000227611LINC010741loss1362895438628965311
ENSG00000202478RNU6-81P1loss1364357934643580371
ENSG00000215430OR7E156P1loss1364316498643169451
ENSG00000228842PCDH9-AS21loss1367399301674891631
ENSG00000214266STARP11loss136588398765885085-1
ENSG00000226537OR7E33P1loss1368485219684860801
ENSG00000214263RPSAP531loss136784097767841838-1
ENSG00000229910HNRNPA1P181loss136887573768877434-1
ENSG00000225801RABEPKP11loss1371870342718713671
ENSG00000230405RPS3AP521loss1369208322692086181
ENSG00000226617RPL21P1101loss1373277831732782761
ENSG00000228295LINC003921loss1374138381741622071
ENSG00000224853LINC003931loss137398761074222390-1
ENSG00000206617RNY1P51loss137486323774863351-1
ENSG00000235532LINC004021loss1374805594748341131
ENSG00000226240LINC003811loss1374993310750092961
ENSG00000118939UCHL33no signal1376123619761800851
ENSG00000214249CTAGE11P1loss137581208075814432-1
ENSG00000102794IRG13no signal1377522632775327771
ENSG00000136153LMO73no signal1376194570764340041
ENSG00000234377RNF219-AS13no signal1378493824791914631
ENSG00000229249LINC004463no signal1378587018786277301
ENSG00000236133LINC010693no signal137856350778564781-1
ENSG00000237109RPL21P1113no signal1379335310793357861
ENSG00000202398RNU6-61P3no signal138094356180943669-1
ENSG00000225427LINC003313no signal137936145479366442-1
ENSG00000233349LINC003333no signal1385136499851373711
ENSG000002704003no signal1383719675837200381
ENSG00000228074UBBP55no signal1387871259878715241
ENSG00000231879TXNL1P15no signal1387377755873783081
ENSG00000236176LINC003533no signal139020094590206058-1
ENSG00000229443LINC004333no signal1389193119891977641
ENSG00000234384LINC010493no signal1391145541911873341
ENSG00000125285SOX213no signal139536188695364389-1
ENSG00000212559RNA5SP353no signal139467772494677852-1
ENSG00000200211RNY4P273no signal139598836095988455-1
ENSG00000237924RPL21P1123no signal139541280795413269-1
ENSG00000235137HSP90AB6P3no signal139753609697542067-1
ENSG00000231914LINC003873no signal1319246967192503031
ENSG00000229788LINC003883no signal131918443819185815-1
ENSG00000236169LINC004183no signal131929290719293869-1
ENSG00000227784ZNF965P3no signal1319308220193090361
ENSG00000204718CNN2P123no signal1319300846193015541
ENSG000002348943no signal131972569419726447-1
ENSG00000187721GTF2IP33no signal131960013819606766-1
ENSG00000225316LINC003503no signal1320161258201624901
ENSG00000237164SLC25A15P23no signal1319985371199903281
ENSG000002386653no signal1320449327204494251
ENSG00000172458IL17D3no signal1321276266212972371
ENSG00000236076LINC010723no signal1320676840206773691
ENSG00000237952RPL7AP733no signal1323377435233777871
ENSG00000201821RNU4-9P3no signal132161266821612806-1
ENSG00000262619LINC006213no signal132346879523490508-1
ENSG00000151835SACS3no signal132390296524007841-1
ENSG00000102683SGCG3no signal1323755091238993041
ENSG00000253771TPTE2P13no signal132549881525542625-1
ENSG00000205863C1QTNF9B3no signal132446523824476794-1
ENSG00000225105LINC010763no signal132576724525784433-1
ENSG00000234056AMER2-AS13no signal132574696625754217-1
ENSG00000132970WASF35no signal1327131840272630851
ENSG00000223782RPS21P85no signal1327551680275519261
ENSG00000230256FGFR1OP2P15no signal1327479499274799981
ENSG00000207330RNU6-73P5no signal1328402900284030061
ENSG00000186184POLR1D5no signal1328194903282415481
ENSG00000132963POMP5no signal1329233241292530621
ENSG00000102755FLT15no signal132887448929069265-1
ENSG00000139508SLC46A35no signal132927420129293107-1
ENSG00000224329LINC002975no signal133044675030462542-1
ENSG00000233588CYP51A1P25no signal132929652329298158-1
ENSG00000224405LINC005725no signal133049278430500788-1
ENSG00000132965ALOX5AP5no signal1331309645313385561
ENSG00000232117LINC003845no signal133072602330733758-1
ENSG00000230403LINC010665no signal133156929931570275-1
ENSG000002381855no signal133154742631551760-1
ENSG00000133105RXFP25no signal1332313674323770091
ENSG000002304905no signal133392934334250905-1
ENSG00000230300STARD13-IT15no signal133373272433738546-1
ENSG000002718505no signal1334922180351883071
ENSG00000180660MAB21L15no signal133604792636050832-1
ENSG00000172915NBEA5no signal1335516424362471591
ENSG000002660475no signal1336929928369300151
ENSG00000207203RNU6-71P5no signal1336841305368414111
ENSG00000232378RPL29P285no signal133750057537501356-1
ENSG00000133101CCNA15no signal1337005967370170191
ENSG00000133110POSTN5no signal133813672038172981-1
ENSG00000188811NHLRC35no signal1339612443396242461
ENSG00000252795RNU6-56P5no signal1339353561393536531
ENSG00000207458RNY3P95no signal1340800964408010691
ENSG00000214823NXT1P15no signal133974377339744088-1
ENSG00000102743SLC25A155no signal1341363548413842471
ENSG00000215482CALM2P35no signal134174483641745284-1
ENSG00000264226MIR31685no signal134167515541675236-1
ENSG00000224394GPC6-AS23no signal139447067794488397-1
ENSG00000252335RNU6-62P3no signal1395671489956715901
ENSG00000271492MEMO1P53no signal1396046303960467081
ENSG00000102580DNAJC33no signal1396329393964472431
ENSG00000139797RNF113B3no signal139882803998829519-1
ENSG00000224418STK24-AS13no signal1399229498992310841
ENSG00000212197RNY3P63no signal13100188573100188650-1
ENSG00000125246CLYBL3no signal131002589191005493871
ENSG00000263615MIR43063no signal131002953131002954031
ENSG000002243563no signal13101187995101232371-1
ENSG00000125247TMTC43no signal13101256181101327347-1
ENSG000002723493no signal13102369198102369728-1
ENSG00000226620LINC003433no signal131063566291064167891
ENSG00000230156LINC004433no signal131073062641073245111
ENSG000002214733no signal131082883791082884641
ENSG00000229938MYO16-AS23no signal13109753609109754267-1
ENSG00000134871COL4A23no signal131109581591111653741
ENSG00000259831LINC005673no signal13111462023111465431-1
ENSG00000225760LINC004313no signal131116356541116429111
ENSG00000233644ARHGEF7-IT13no signal131117749991117966111
ENSG00000182968SOX13no signal131127219131127260201
ENSG00000232684ATP11A-AS13no signal13113399763113409007-1
ENSG000002346033no signal131135395511135399941
ENSG00000126217MCF2L3no signal131135486921137540531
ENSG000002693563no signal131136630921136637381
ENSG00000231882F10-AS13no signal13113782469113783194-1
ENSG00000153531ADPRHL13no signal13114076260114107839-1
ENSG00000150403TMCO33no signal131141453101142045421
ENSG00000184497TMEM255B3no signal131144622161145149261
ENSG00000169062UPF3A3no signal131150470591150712831
ENSG00000229456RLIMP15no signal1341192875411954851
ENSG00000223280RNU6-57P5no signal134192869341928795-1
ENSG00000205240OR7E36P5no signal134200542542006446-1
ENSG00000229696KARSP15no signal1342499734425014851
ENSG00000133106EPSTI15no signal134346052443566407-1
ENSG00000229928LINC004005no signal1343732767437336021
ENSG00000179611DGKZP15no signal1344542560445453351
ENSG00000227258SMIM2-AS15no signal1344716682448130101
ENSG000002718185no signal1345697228456975491
ENSG00000133112TPT15no signal134591100845915505-1
ENSG00000228869COX4I1P25no signal1346245980462465261
ENSG00000235903CPB2-AS15no signal1346626941466874671
ENSG000002384835no signal134680980546809908-1
ENSG00000241353PPP1R2P45no signal134691710247012325-1
ENSG00000227019OR7E101P5no signal1347034744470352561
ENSG00000102531FNDC3A5no signal1349550048497839151
ENSG00000102543CDADC15no signal1349822047498676181
ENSG000002154625no signal135000749550020554-1
ENSG00000236577SNRPGP145no signal1350063106500635001
ENSG00000123179EBPL5no signal135023485950265611-1
ENSG000002035475no signal1350243040502432541
ENSG00000232150ST13P45no signal1350746225507473171
ENSG000002318565no signal1352378433523873561
ENSG00000123191ATP7B5no signal135250680952585630-1
ENSG00000236044FABP5P25no signal1352540878525412851
ENSG00000198384TPTE2P35no signal1353063128531612221
ENSG000002666995no signal135538000255380092-1
ENSG00000264387MIR50075no signal1355748589557486831
ENSG00000139734DIAPH36no signal136023971760738121-1
ENSG00000227336LINC004345no signal136078848660789080-1
ENSG00000266663MIR31695no signal136177393261774014-1
ENSG00000197991PCDH205no signal136198381862002220-1
ENSG000002269741loss1364320934643213231
ENSG00000215432OR7E104P1loss1364411166644115891
ENSG00000263561MIR47041loss1366792382667924561
ENSG00000230040LINC003641loss1367946519679541081
ENSG00000227969NPM1P221loss136840600868406959-1
ENSG00000224640SRSF1P11loss136998234869982867-1
ENSG00000232314PSMC1P131loss137046823370469217-1
ENSG00000226554SOGA2P11loss1371497796714985871
ENSG00000226846LINC003481loss1371589273717425491
ENSG00000204899MZT11loss137328249573301825-1
ENSG00000232041PSMD10P31loss1373610539736109861
ENSG00000236972FABP5P11loss137367471373675123-1
ENSG00000200267RNU6-66P1loss137368705273687155-1
ENSG000002659591loss137369884973698947-1
ENSG00000223880LINC010781loss1375824616758261481
ENSG00000228002DHX9P13no signal1377559003775620781
ENSG00000005812FBXL33no signal137756674077601330-1
ENSG00000236051MYCBP2-AS13no signal1377649649776726771
ENSG000002356253no signal137884985578851649-1
ENSG00000271386SRGNP13no signal1378859973788604231
ENSG00000200686RNY3P33no signal137892936278929463-1
ENSG000002717763no signal1379170264791737541
ENSG00000232132NDFIP2-AS13no signal138005149980055366-1
ENSG00000136158SPRY23no signal138091011180915086-1
ENSG000002292463no signal1381617805816185771
ENSG000002389803no signal138177839881778491-1
ENSG00000237148HIGD1AP23no signal1381847026818473051
ENSG00000237099GYG1P23no signal1383397266833982711
ENSG00000214181DDX6P25no signal1386927755869295241
ENSG00000266052MIR45005no signal138827092088270995-1
ENSG00000229287FABP5P43no signal139283296892833138-1
ENSG00000263741MIR548AS3no signal1393142416931424731
ENSG00000206787RNU6-76P3no signal1319454194194542971
ENSG00000226057PHF2P23no signal131952089519636858-1
ENSG00000229147SMPD4P23no signal131972670719745334-1
ENSG00000238132CASC4P13no signal132013772920139040-1
ENSG00000196199MPHOSPH83no signal1320207788202475991
ENSG000002695913no signal1320268547202692401
ENSG00000233469ST6GALNAC4P13no signal132039226120392759-1
ENSG00000233524RANP83no signal132132117421322196-1
ENSG00000180172RPS12P233no signal132166845721668853-1
ENSG000002244293no signal132187765421922860-1
ENSG00000235076GAPDHP523no signal1321932512219334531
ENSG00000180776ZDHHC203no signal132195026322033509-1
ENSG00000226908HIST1H2BPS33no signal132205797322058313-1
ENSG00000127863TNFRSF193no signal1324144509242502321
ENSG000002687353no signal1324322243243239011
ENSG00000205861C1QTNF9B-AS13no signal1324463028244714021
ENSG000002287413no signal1324553949246091661
ENSG00000205822TPTE2P63no signal1324982295251718141
ENSG000002430083no signal1325141011251718141
ENSG00000165566AMER23no signal132573582225746426-1
ENSG00000231983LINC004155no signal132662641426627523-1
ENSG00000237001WASF3-AS15no signal132718068127215501-1
ENSG00000152484USP125no signal132764029327746033-1
ENSG00000139517LNX25no signal132812005028194541-1
ENSG00000226703NPM1P45no signal132827053028271341-1
ENSG00000232587EEF1A1P35no signal1328788650287900341
ENSG00000252928RNU6-64P5no signal1330855902308560061
ENSG00000232489MFAP1P15no signal133111578031117034-1
ENSG00000175664TEX265no signal1331506840315496391
ENSG00000229427ANKRD26P45no signal1331885426318870581
ENSG000002306335no signal1332872291328728491
ENSG00000133116KL5no signal1333590207336402821
ENSG000002215195no signal133606855136068674-1
ENSG000002226025no signal133730273937302829-1
ENSG00000120693SMAD95no signal133741896837494902-1
ENSG00000252812RN7SKP25no signal134098125940981577-1
ENSG00000215483LINC005985no signal134102513141055143-1
ENSG00000150907FOXO15no signal134112980441240734-1
ENSG000002707253no signal1398591610986057931
ENSG00000125249RAP2A3no signal1398086476981213821
ENSG00000228889UBAC2-AS13no signal139984863199852964-1
ENSG00000243366RN7SL60P3no signal1399324234993245291
ENSG00000228808HMGB3P43no signal131000244271000249401
ENSG00000218502H2AFZP33no signal139986762699868012-1
ENSG000002662073no signal13100105650100105723-1
ENSG00000238241CCR12P3no signal13100060035100061316-1
ENSG00000260738LINC005543no signal13100647153100650163-1
ENSG00000237082COX5BP63no signal13101276129101276683-1
ENSG00000228501RPL15P183no signal13100802735100803346-1
ENSG00000215399HMGB3P73no signal131024542281024548381
ENSG00000214051ARF4P33no signal13101408805101409313-1
ENSG00000272143FGF14-AS23no signal131030469801030480531
ENSG00000234445FGF14-AS13no signal131030198891030260161
ENSG00000231633LINC002833no signal131033953401033975741
ENSG000002525503no signal13106549872106549992-1
ENSG00000250878METTL21EP3no signal131035324491035483831
ENSG00000174408PPIAP243no signal13107516164107516634-1
ENSG00000272274LINC005513no signal131072701581072837071
ENSG00000232814COL4A2-AS13no signal13111154922111160526-1
ENSG000002018473no signal13107973243107973311-1
ENSG00000213995CARKD3no signal131112678811112923401
ENSG00000139832RAB203no signal13111175417111214080-1
ENSG00000229152ANKRD10-IT13no signal13111547406111551519-1
ENSG00000230371KARSP23no signal131137847301137863681
ENSG000002603853no signal131127378631127397851
ENSG00000227208LINC005523no signal13114451484114454062-1
ENSG00000198176TFDP13no signal131142390131142957851
ENSG00000229723LINC010543no signal13115095034115099423-1
ENSG00000264539MIR548AR3no signal131150099801150100361
ENSG00000270444AZU1P15no signal134043084740431231-1
ENSG00000168852TPTE2P55no signal134139643241495890-1
ENSG00000120688WBP45no signal1341635410416581371
ENSG00000239827SUGT1P35no signal134148229541495910-1
ENSG00000232540RPL36P195no signal1343968661439689611
ENSG00000238025ZDHHC4P15no signal1343507994435090281
ENSG000002257275no signal1345011343450269631
ENSG00000151778SERP25no signal1344947801449718501
ENSG00000237585LINC004075no signal1345225948452751521
ENSG00000173988LRRC635no signal1346786083468515011
ENSG00000136167LCP15no signal134670005546786006-1
ENSG00000244521RN7SL700P5no signal134803307848033369-1
ENSG000002318175no signal134702927047060641-1
ENSG00000123178SPRYD75no signal135048684250510626-1
ENSG00000233610LINC004625no signal134915111049152224-1
ENSG00000231607DLEU25no signal135060126950699856-1
ENSG00000233672RNASEH2B-AS15no signal135145082251484848-1
ENSG000002293235no signal135109506951101585-1
ENSG00000222920RNA5SP295no signal135160188351601988-1
ENSG00000123201GUCY1B25no signal135156864751654998-1
ENSG00000123171CCDC705no signal1352436117524403661
ENSG00000102786INTS65no signal135192821352028400-1
ENSG000002716525no signal1354690611546909861
ENSG00000197168NEK55no signal135261109352703214-1
ENSG00000136149RPL13AP255no signal135501483955015450-1
ENSG00000223076RNA5SP315no signal1361187742611878681
ENSG00000271140PRR20FP5no signal1357747587577477661
ENSG00000229578LINC003581loss136257822662603681-1
ENSG00000253018RNY4P315no signal136139083161390923-1
ENSG000002216851loss1366438305664383981
ENSG00000214269LGMNP11loss136553222965533528-1
ENSG00000236534H3F3BP11loss1372249199722496011
ENSG00000235737TRIM60P191loss1366843129668445901
ENSG00000200037RNA5SP321loss1372552226725523441
ENSG00000201253RNU4-10P1loss1373765665737658041
ENSG000002517151loss137303465773034739-1
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