Cell Line Synopsis
Cell Line Overview
Mutations
Copy Number Variation
Gene Expression
RNAi
Compound Sensitivity Profile
Similar Cell Lines

NCI-H2342 - Copy Number Variation - Cell Line Synopsis

External Data Sources:COSMIC - Cell Lines Project
Genome Average Copy Number: 3.66
Chromosome Average Copy Number: 3.74

Regions

Chromosome Genome Start Genome Stop Copy Number Signal
1215044396305572no signal
12963387197282930loss
121321325851321333360loss
121321423321337781904no signal
12996313951002671326no signal
121002675101076259385no signal
121076267411287167953no signal
121287169141321207164no signal
129731637185191942no signal
1218523778185270224no signal
1218531106194595915no signal
1219460070306283622no signal
1230630673306306734no signal
1230631079346747955no signal
1234675363406102211loss
1240612210453585752no signal
1245358596461682294no signal
1246170209461923570loss
1246193723513369497no signal
1251337669578101046no signal
12578101525954420311gain
12595444326144663013gain
1261446746619458527no signal
1261947477738703354no signal
1273870560761646694no signal
1276166960762429600loss
1276243392796902934no signal
1279690484923379874no signal
1292338200996312194no signal

Genes

Ensembl Gene Gene Name(s) Copy Number Signal Chromosome Start Stop Strand
ENSG00000189238LINC009433no signal121272108161272307981
ENSG000002570353no signal121281086981281108121
ENSG00000253089RNU1-104P3no signal121278059001278060741
ENSG000002570254no signal121288845231288893591
ENSG000002565513no signal12128571530128602677-1
ENSG000002558384no signal12129428819129429748-1
ENSG000002375784no signal121302319331302324371
ENSG000002561374no signal12130165972130182772-1
ENSG00000111452GPR1334no signal121314384521316260141
ENSG000002562984no signal121305316771305329211
ENSG000002557044no signal12132081402132081660-1
ENSG000002562044no signal121314621071314633131
ENSG000002559164no signal121329064361329081611
ENSG00000198040ZNF844no signal121336138781336398851
ENSG00000090615GOLGA34no signal12133345495133405444-1
ENSG00000240991RPL23AP674no signal121337020651337025381
ENSG00000196387ZNF1404no signal121336564241336841301
ENSG00000139438FAM222A3no signal121101520331102083121
ENSG00000258011HMGA1P33no signal12110867764110868087-1
ENSG00000241413RN7SL441P3no signal12110304021110304314-1
ENSG00000241286RPL29P253no signal12111279342111280191-1
ENSG00000151164RAD9B3no signal121109394601109698911
ENSG000001858473no signal121113743891113960121
ENSG00000111252SH2B33no signal121118437521118894271
ENSG00000257539HSPA8P143no signal121118196711118234421
ENSG00000111275ALDH23no signal121122046911122477821
ENSG00000111271ACAD103no signal121121238571121949031
ENSG00000111344RASAL13no signal12113536624113574044-1
ENSG00000135144DTX13no signal121134945141135358331
ENSG00000123064DDX543no signal12113594979113623284-1
ENSG00000151176PLBD23no signal121137963711138272031
ENSG000002337963no signal121135965561135969171
ENSG000002579353no signal121139098081139184291
ENSG000002579973no signal121145181861145512941
ENSG00000122965RBM193no signal12114254543114404176-1
ENSG000002582543no signal121150595661150607271
ENSG000002558303no signal121149866591149876571
ENSG000001992203no signal12115095754115095867-1
ENSG000002575193no signal121157009751157084011
ENSG000002575173no signal121152064791152096561
ENSG00000123066MED13L3no signal12116395711116715143-1
ENSG000002581023no signal121169859111169921861
ENSG000002583463no signal121168065691168272761
ENSG00000135090TAOK33no signal12118587606118810750-1
ENSG00000135119RNFT23no signal121171760961172914361
ENSG000002131443no signal121196326551196331991
ENSG000002558143no signal12119256609119271341-1
ENSG00000111737RAB353no signal12120532899120555306-1
ENSG00000122966CIT3no signal12120123595120315095-1
ENSG00000255857PXN-AS13no signal121206390941206509411
ENSG00000135097MSI13no signal12120779133120806983-1
ENSG00000240925RPS20P313no signal121206852631206855941
ENSG00000167272POP53no signal12121016567121019201-1
ENSG00000111786SRSF93no signal12120899471120907596-1
ENSG000002722143no signal12121407641121410095-1
ENSG00000265455MIR47003no signal121211609961211610691
ENSG00000135100HNF1A3no signal121214163461214403151
ENSG00000135124P2RX43no signal121216476601216719091
ENSG000002569633no signal121215176451215179271
ENSG00000158023WDR663no signal121223557681224418331
ENSG000002126943no signal12122233173122241812-1
ENSG000002558563no signal12122445340122457920-1
ENSG00000176383B3GNT43no signal121226880901226934991
ENSG000002565463no signal121225012121225065221
ENSG00000184445KNTC13no signal121230117931231109431
ENSG000002560443no signal12123234028123234133-1
ENSG000002559723no signal12123048282123048309-1
ENSG00000111325OGFOD23no signal121234591271234645901
ENSG00000139722VPS37B3no signal12123349882123380991-1
ENSG00000051825MPHOSPH93no signal12123636867123728561-1
ENSG00000139697SBNO13no signal12123773656123849390-1
ENSG00000130921C12orf653no signal121237174631237425061
ENSG00000150977RILPL23no signal12123899936123921264-1
ENSG000002559653no signal121248679271248680561
ENSG00000111364DDX553no signal121240866241241054881
ENSG00000150990DHX373no signal12125431371125473668-1
ENSG000002146503no signal121249977681249993591
ENSG00000139364TMEM132B3no signal121256713821261469171
ENSG000002560933no signal12125540905125541127-1
ENSG000002559443no signal12127112718127174868-1
ENSG00000256310NDUFA5P63no signal121270087941270091721
ENSG000002572874no signal127282550272825855-1
ENSG000002574104no signal127218763572193407-1
ENSG000002582944no signal127350973773537638-1
ENSG000002571834no signal127464241774677449-1
ENSG000002581234no signal1273552970736020971
ENSG000002580914no signal1276319993763202471
ENSG000002573294no signal1276358220763608421
ENSG000001989234no signal1276357812763587801
ENSG00000241045RPL7P434no signal1277115314771160661
ENSG00000139289PHLDA14no signal127641922776427712-1
ENSG00000186908ZDHHC174no signal1277157368772474761
ENSG00000111052LIN7A4no signal128118629981331704-1
ENSG000002580664no signal1278169563781773561
ENSG00000139220PPFIA24no signal128165204582153332-1
ENSG000002212604no signal1282658722826588231
ENSG000002577474no signal1282347498823869121
ENSG00000242850RPL23AP684no signal128756376287564206-1
ENSG00000179104TMTC24no signal1283080659835286491
ENSG000002579404no signal1288210263882116081
ENSG000002581734no signal128814719188147224-1
ENSG00000133641C12orf294no signal1288427623884439371
ENSG00000240721RPS4XP154no signal1288338662883445961
ENSG000002581004no signal1291755973917623831
ENSG00000011465DCN4no signal129153902591576900-1
ENSG000002581254no signal1292073908920746501
ENSG00000133639BTG14no signal129253628692539673-1
ENSG000002578634no signal1292295234922999631
ENSG000002383614no signal129365940593659508-1
ENSG00000187510PLEKHG74no signal1293115281931662311
ENSG00000198015MRPL424no signal1293861264938975451
ENSG00000266099MIR57004no signal1294955565949556351
ENSG00000244391RN7SL330P4no signal1294754996947553001
ENSG00000199506RNU6-247P4no signal129618630796186413-1
ENSG00000257150PGAM1P54no signal1296043031960677751
ENSG00000139344AMDHD14no signal1296337071963623701
ENSG000002582514no signal129645380296454153-1
ENSG000002577154no signal1296419101964217491
ENSG000002581774no signal129661657596617751-1
ENSG00000139350NEDD14no signal1297301001973471291
ENSG00000188596C12orf554no signal1296883349972693331
ENSG000002251854no signal129898450198984992-1
ENSG000002583124no signal129850679298686223-1
ENSG000002216254no signal1298999652989997381
ENSG000002067905no signal12100651466100651568-1
ENSG00000185046ANKS1B4no signal1299120235100378432-1
ENSG00000239413RPS27P235no signal121018182191018184691
ENSG000002580075no signal12101432198101432872-1
ENSG00000136048DRAM15no signal121022711291024059081
ENSG00000264554RN7SL793P5no signal12102611098102611391-1
ENSG00000185480PARPBP5no signal121025139561025912981
ENSG000002389095no signal12103632176103632253-1
ENSG00000171759PAH5no signal12103230663103352188-1
ENSG00000139372TDG5no signal121043595821043826521
ENSG00000111727HCFC25no signal121044582351044986391
ENSG000002159765no signal121043788891043789821
ENSG00000199415RNA5SP3705no signal121045190141045191341
ENSG00000264295MIR39225no signal121049854111049854941
ENSG00000198431TXNRD15no signal121046095571047440611
ENSG00000111783RFX45no signal121069766851071565811
ENSG000002574385no signal121064969411064999431
ENSG00000075856SART33no signal12108916357108955176-1
ENSG00000240631RPL30P125no signal121073045351073048871
ENSG00000110906KCTD103no signal12109886461109915349-1
ENSG00000110887DAO3no signal121092527081092948191
ENSG000002578296no signal125270040052702155-1
ENSG00000161850KRT826no signal125278771552800139-1
ENSG000002582536no signal1252774244527961911
ENSG00000257125KRT127P6no signal125314576253147605-1
ENSG00000257402KRT126P6no signal125310935153112824-1
ENSG00000185069KRT766no signal125316193953171129-1
ENSG000002573896no signal1253231187532315231
ENSG000002574046no signal1253176434531766231
ENSG00000170423KRT786no signal125323158853242876-1
ENSG00000111077TENC16no signal1253440753534581561
ENSG00000170421KRT86no signal125329097753343738-1
ENSG00000037965HOXC86no signal1254402832544075701
ENSG00000139637C12orf106no signal1253693470537009611
ENSG00000207571MIR6156no signal1254427734544278291
ENSG00000170627GTSF16no signal125484973454867386-1
ENSG000002604706no signal125453885354541009-1
ENSG00000172551MUCL16no signal1255224303552521771
ENSG00000257780GLYCAM16no signal125500197155004246-1
ENSG000002578246no signal125493689554937889-1
ENSG000002573506no signal125551645255517904-1
ENSG00000230307OR6C5P6no signal1255705619557065411
ENSG00000205331OR6C72P6no signal1255677534557068601
ENSG00000135437RDH56no signal1256114151561184891
ENSG00000233606OR6C66P6no signal1255782229557831581
ENSG000002573906no signal125615105956221330-1
ENSG00000065361ERBB36no signal1256473641564972891
ENSG00000123374CDK26no signal1256360553563665681
ENSG00000135482ZC3H106no signal1256511943565162781
ENSG00000229117RPL416no signal1256510370565117271
ENSG00000139641ESYT16no signal1256512034565384551
ENSG00000025423HSD17B66no signal1257145945571815741
ENSG00000241217RN7SL809P6no signal125706423657064530-1
ENSG000002123836no signal1257255159572552921
ENSG000002586796no signal1257216769572680521
ENSG000002681626no signal1257390745573913351
ENSG000002588306no signal125764339257690267-1
ENSG000002020676no signal1257621757576218801
ENSG00000175203DCTN211gain125792388557941114-1
ENSG0000025734211gain125808791558115293-1
ENSG00000135502SLC26A1011gain1258013310580199341
ENSG00000123297TSFM11gain1258176372582018541
ENSG00000037897METTL111gain125816225458166576-1
ENSG00000207789MIR26A211gain125821839258218475-1
ENSG0000023717613gain1260205883602063571
ENSG00000244390RPS6P2211gain1259413950594146751
ENSG0000025818413gain1260609775606101651
ENSG00000198673FAM19A24no signal126210204062672931-1
ENSG000002583364no signal126199423161994624-1
ENSG000002384404no signal126474954264749645-1
ENSG00000199179MIRLET7I4no signal1262997466629975501
ENSG00000207099RNU6-166P4no signal1265489529654896351
ENSG000002556934no signal1265277174653713021
ENSG00000149948HMGA24no signal1266217911663600751
ENSG00000241749RPSAP524no signal126615180066220754-1
ENSG00000155974GRIP14no signal126674121167197966-1
ENSG00000139233LLPH4no signal126651684266524548-1
ENSG000002557724no signal1268323015683637971
ENSG00000244432RPL39P284no signal126839517468395328-1
ENSG00000255733IFNG-AS14no signal1268383225686284661
ENSG000002525474no signal126951134869511432-1
ENSG000002566644no signal1269235726692361641
ENSG00000198812LRRC104no signal127000235170004942-1
ENSG000002580644no signal1272067984720927481
ENSG000002471314no signal127010741370132348-1
ENSG000002479342no signal122831623128343299-1
ENSG000002577562no signal123038371230449640-1
ENSG000002530522no signal1230052836300529401
ENSG00000235884LINC009415no signal1230947977309556451
ENSG00000170456DENND5B5no signal123153515731744031-1
ENSG000002709265no signal123125803931259764-1
ENSG000002563725no signal123200595532006341-1
ENSG00000188375H3F3C5no signal123194412331945175-1
ENSG00000174718KIAA15515no signal1232112304321460391
ENSG000002713575no signal123225341932253669-1
ENSG000002578525no signal1232225668322258141
ENSG00000253063RNU6-494P5no signal123263031632630405-1
ENSG000002575305no signal123225705132260462-1
ENSG000002573165no signal1233138772331400041
ENSG000002447435no signal1233016052330163671
ENSG000002578991loss123793808737938386-1
ENSG00000110975SYT105no signal123352717333592754-1
ENSG00000201708RNA5SP3591loss123855720538557317-1
ENSG000002571731loss123847233138472801-1
ENSG000002581191loss123893797938983614-1
ENSG000001995711loss124021355240213685-1
ENSG000002559911loss123986024439861147-1
ENSG00000165966PDZRN42no signal1241582250419683921
ENSG000002576802no signal1241122613411236991
ENSG00000258239MTND2P172no signal124209229742092984-1
ENSG000002578492no signal1243359925433611561
ENSG000002407592no signal124307267543072926-1
ENSG00000139173TMEM1172no signal1244229770447835451
ENSG000002578962no signal1244130431441348701
ENSG000002579472no signal124463817744657765-1
ENSG00000184613NELL22no signal124490205845315631-1
ENSG000002578642no signal124464221544642787-1
ENSG000002017882no signal124527465145274752-1
ENSG000002573684no signal1245838549458392211
ENSG00000177119ANO64no signal1245609770458341871
ENSG000002572617no signal1246777462468500511
ENSG00000239178RNU6-671P4no signal124594837345948442-1
ENSG000001995667no signal124773994947740080-1
ENSG000002692827no signal1248759919487617381
ENSG00000061273HDAC77no signal124817650548226915-1
ENSG00000139620KANSL27no signal124904718449076021-1
ENSG000002582837no signal1249388933493901171
ENSG000002715477no signal124919435949194869-1
ENSG00000167553TUBA1C7no signal1249582519496671141
ENSG00000139636LMBR1L7no signal124949091949504683-1
ENSG00000135519KCNH37no signal1249932940499520911
ENSG000002583347no signal124968641449718359-1
ENSG00000258104HIGD1AP97no signal1250013117500133951
ENSG00000187778MCRS17no signal124995032749961936-1
ENSG00000186666BCDIN3D7no signal125023157350236912-1
ENSG000002575707no signal1250103020501031191
ENSG00000161798AQP57no signal1250355653503594641
ENSG00000212496RNU6-1093P7no signal125065002150650127-1
ENSG00000066117SMARCD17no signal1250478755504944951
ENSG000002715966no signal125134290051343167-1
ENSG00000243075RN7SL519P7no signal125123528351235612-1
ENSG00000110911SLC11A26no signal125137318451422349-1
ENSG00000184271POU6F16no signal125158071951611477-1
ENSG00000135457TFCP26no signal125148744651566926-1
ENSG00000135503ACVR1B6no signal1252345451523908621
ENSG000002580216no signal1252294349522951201
ENSG00000161835GRASP6no signal1252400724524096731
ENSG000002658046no signal1252507709525077961
ENSG000002579896no signal125248626952498081-1
ENSG000002660262no signal12838236883824331
ENSG00000226091LINC009372no signal1284485828549399-1
ENSG000002152412no signal12838801183951601
ENSG00000256069A2MP12no signal1293811299428413-1
ENSG000002558292no signal12881660788216071
ENSG00000212345RNU6-700P2no signal1297767189776824-1
ENSG000002124402no signal1294392699439418-1
ENSG000002569122no signal1299699469970621-1
ENSG00000173391OLR12no signal121031090210324737-1
ENSG00000255734HNRNPABP12no signal1210264337102650701
ENSG00000060140STYK12no signal121077153810826917-1
ENSG000002560392no signal1210705962107106481
ENSG00000060138YBX32no signal121085168310875911-1
ENSG00000256981TAS2R182no signal121131138411312293-1
ENSG00000121314TAS2R82no signal121095865010959892-1
ENSG000002562372no signal121169432911708772-1
ENSG00000253095RNU6-676P2no signal1211315699113157631
ENSG000002211282no signal121169485711694979-1
ENSG00000111261MANSC12no signal121248219812503475-1
ENSG00000121380BCL2L142no signal1212202778123640181
ENSG000002556702no signal1212638287126445151
ENSG000002713702no signal121260503712605415-1
ENSG00000111276CDKN1B2no signal1212867992128753051
ENSG000002560112no signal1213115234131164731
ENSG00000013588GPRC5A2no signal1213043716130708711
ENSG000002431292no signal121317419413174540-1
ENSG000002563462no signal1214322680143228111
ENSG00000273079GRIN2B2no signal121369316514133053-1
ENSG00000255749GNAI2P12no signal1214407846144081601
ENSG00000266749RN7SL46P2no signal1214366028143662991
ENSG000002563392no signal1214994026149976421
ENSG00000255660RERG-AS12no signal1215304857153082171
ENSG00000134533RERG2no signal121526071715501609-1
ENSG00000200105RNU6-251P2no signal121582464115824744-1
ENSG000002558712no signal1216846734168489111
ENSG000002564502no signal1216666379166673051
ENSG00000008394MGST12no signal1216500076167621931
ENSG000002557402no signal1216939696169407791
ENSG00000139151PLCZ15no signal121883610318890991-1
ENSG000002561385no signal1218645985186466571
ENSG00000177938CAPZA35no signal1218891045188921211
ENSG00000255993PSMC1P95no signal1218845696188470301
ENSG00000200247RNU6-254P2no signal121959888319598989-1
ENSG000002559092no signal1219566087195663951
ENSG000002556442no signal1221912914219196391
ENSG000002569232no signal1222895516228960251
ENSG000002567742no signal1222749162227494851
ENSG00000134532SOX52no signal122368244024103966-1
ENSG000002563532no signal122326139223261427-1
ENSG00000197503LINC004772no signal122471989824737102-1
ENSG000002558642no signal122436619024715524-1
ENSG000002564822no signal1224983355249894921
ENSG000002588792no signal1225164349251738271
ENSG000002559212no signal1225102097251130921
ENSG00000152936IFLTD12no signal122556224125801513-1
ENSG000002568942no signal122627808826279550-1
ENSG000002557252no signal1225956137259574601
ENSG000002566402no signal1226953776269542351
ENSG00000212549RNA5SP3542no signal122652653126526666-1
ENSG00000029153ARNTL22no signal1227485787275762411
ENSG000002565572no signal122776166627761979-1
ENSG00000110841PPFIBP12no signal1227676364278484971
ENSG00000205693MANSC42no signal122791567127924209-1
ENSG00000133687TMTC12no signal122965377329937692-1
ENSG00000010379SLC6A132no signal12329789372039-1
ENSG00000111203ITFG22no signal12292178829689571
ENSG00000256837CACNA1C-IT12no signal12212737921296981
ENSG000002060442no signal1229583972966213-1
ENSG00000053702NRIP22no signal1229345142944710-1
ENSG000002424442no signal1242188274227298-1
ENSG000002556082no signal12494812149518411
ENSG000002729212no signal12471411047718091
ENSG000002561462no signal12542512754285131
ENSG00000111262KCNA12no signal12501907150405271
ENSG00000010278CD92no signal12630888163474251
ENSG00000139200PIANP2no signal1268029586809966-1
ENSG00000184574LPAR52no signal1267280016745613-1
ENSG000002719692no signal12707411270745451
ENSG000002700682no signal12683239968328531
ENSG00000182326C1S2no signal12709635171783361
ENSG00000139194RBP52no signal1272762807281538-1
ENSG000002570782no signal1271484607148945-1
ENSG00000177675CD163L12no signal1274992817632493-1
ENSG000002564802no signal12739002873935821
ENSG000002016632no signal1280033138003414-1
ENSG00000089818NECAP12no signal12823480782503671
ENSG00000065970FOXJ22no signal12818529982080991
ENSG00000171847FAM90A12no signal1283738568380214-1
ENSG00000111729CLEC4A2no signal12827622882912031
ENSG000002699383no signal12124452570124453126-1
ENSG00000179195ZNF6643no signal121244563921244999861
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