Cell Line Synopsis
Cell Line Overview
Mutations
Copy Number Variation
Gene Expression
RNAi
Compound Sensitivity Profile
Similar Cell Lines

NCI-H2342 - Copy Number Variation - Cell Line Synopsis

External Data Sources:COSMIC - Cell Lines Project
Genome Average Copy Number: 3.66
Chromosome Average Copy Number: 4.23

Regions

Chromosome Genome Start Genome Stop Copy Number Signal
172768419728111498no signal
11525557071525865950loss
172756114727633710loss
11525904951527596786no signal
161736658211654no signal
165822383727503533no signal
172811904787497374no signal
178749908810022433no signal
181002405873723424no signal
187372814876317472no signal
187631774988889024no signal
1988959011086418193no signal
11086427841449865414no signal
11449869981525555285no signal
11527619241563871677no signal
11563924551594097343no signal
11594109751594132457no signal
11594153641741710534no signal
11741762182152283043no signal
12152285992158335605no signal
12158390902221620295no signal
12221623732346998767no signal
12347035982492243898no signal

Genes

Ensembl Gene Gene Name(s) Copy Number Signal Chromosome Start Stop Strand
ENSG000002441377no signal1230846444230931238-1
ENSG00000135775COG27no signal12307782352308297281
ENSG00000221290MIR11827no signal1231155574231155670-1
ENSG00000240502RN7SL837P7no signal12310298872310301731
ENSG000002357107no signal1231319844231323373-1
ENSG00000119283TRIM677no signal12312978582313573021
ENSG000002334617no signal1231658134231664302-1
ENSG000002121448no signal12347290212347291481
ENSG00000135749PCNXL27no signal1233119181233431459-1
ENSG00000227630LINC011328no signal12348597892348673901
ENSG000002280448no signal12347820352348189221
ENSG000002580828no signal1235115394235116551-1
ENSG000002279628no signal12355001212355004021
ENSG00000263439MIR47538no signal1235353349235353431-1
ENSG00000143669LYST8no signal1235824341236046940-1
ENSG00000116977LGALS88no signal12366813002367162811
ENSG00000252056RNU5E-2P8no signal1236026688236026737-1
ENSG00000252371RNU6-725P8no signal1238488987238489088-1
ENSG00000077522ACTN28no signal12368497542369279311
ENSG000002597768no signal1239411108239414118-1
ENSG000002269198no signal12409288572409319801
ENSG000002271858no signal1239433025239439761-1
ENSG00000054277OPN38no signal1241753404241840678-1
ENSG00000091483FH8no signal1241660903241683061-1
ENSG00000180287PLD58no signal1242246288242687998-1
ENSG00000212230RNU6-747P8no signal1243244458243244561-1
ENSG00000252084RN7SKP128no signal1242351949242352091-1
ENSG00000162849KIF26B8no signal12453182872458727331
ENSG000002389528no signal1244752848244752946-1
ENSG00000230184SMYD3-IT18no signal1246484965246485740-1
ENSG000002316128no signal1245837034245839780-1
ENSG000002277288no signal1246672340246685894-1
ENSG000002253008no signal12467691752467714041
ENSG00000162851TFB2M8no signal1246703862246729626-1
ENSG00000223519KIF28P8no signal1246935139246993361-1
ENSG000002606988no signal12468454102468483771
ENSG00000203664OR2W58no signal12476543702476557101
ENSG000002289828no signal1247248691247249369-1
ENSG00000196242OR2C38no signal1247693434247697141-1
ENSG00000197437OR13G18no signal1247835320247836365-1
ENSG00000177476OR2G38no signal12477688562477698381
ENSG00000232908HSD17B7P18no signal12479907882479918041
ENSG000002393958no signal1247875115247887066-1
ENSG000001994428no signal12481603022481603981
ENSG00000198104OR2T68no signal12485509102485518361
ENSG00000177212OR2T338no signal1248436073248437138-1
ENSG00000184022OR2T108no signal1248756052248757100-1
ENSG00000189181OR14I18no signal1248844628248845629-1
ENSG00000187701OR2T278no signal1248813232248814185-1
ENSG00000236523NPM1P403no signal12032248712032256031
ENSG00000159388BTG23no signal12032746192032787301
ENSG00000117222RBBP53no signal1205055270205091143-1
ENSG00000202300RNU6-487P3no signal1203288124203288227-1
ENSG00000117280RAB7L13no signal1205737114205744588-1
ENSG000002250633no signal1205202949205205995-1
ENSG000002526923no signal1206261008206261093-1
ENSG00000143466IKBKE3no signal12066437912066702231
ENSG00000196188CTSE3no signal12063174592063321041
ENSG000002610003no signal12066772812066777891
ENSG00000162897FCAMR3no signal1207131310207143970-1
ENSG000002349813no signal12067022482067030391
ENSG000002280813no signal12093463592093467201
ENSG000002328123no signal12089020332089065291
ENSG00000009790TRAF3IP33no signal12099293772099556681
ENSG000002236493no signal12116655972116662591
ENSG00000162757C1orf743no signal1209955661209957904-1
ENSG00000241395RN7SL344P3no signal1211965455211965748-1
ENSG000002277643no signal12118130372118279231
ENSG00000143476DTL3no signal12122089192122807421
ENSG000002262513no signal1212398620212412319-1
ENSG00000264358MIR31223no signal12122509552122510271
ENSG00000203705TATDN33no signal12129651702129899681
ENSG000002349153no signal1212472837212505055-1
ENSG000002336205no signal12162458072162602591
ENSG000002210263no signal1213783039213783183-1
ENSG00000092978GPATCH25no signal1217600334217804424-1
ENSG000002387985no signal1220160853220160956-1
ENSG00000067533RRP155no signal12184586292185113251
ENSG000002257825no signal1220835813220836458-1
ENSG000002328835no signal1220490009220490941-1
ENSG000002324365no signal12216819012216843211
ENSG000002347545no signal1221503422221509638-1
ENSG000002380425no signal1222054323222151865-1
ENSG000002293997no signal1222814756222815200-1
ENSG00000222399RNU6-791P7no signal1222676974222677077-1
ENSG000002281067no signal12229883642230107261
ENSG000002727507no signal1222832209222834854-1
ENSG000002368467no signal12233173912233182961
ENSG000002354287no signal1223741977223742862-1
ENSG00000143502SUSD47no signal1223394161223537544-1
ENSG00000212398RNU6-1248P7no signal12238777532238778161
ENSG000002558357no signal1226074396226111978-1
ENSG000002344767no signal1225634945225653045-1
ENSG00000185155MIXL17no signal12264113192264147551
ENSG000002725627no signal1226248413226249577-1
ENSG000002702877no signal1226599316226599836-1
ENSG00000203685C1orf957no signal12267365012267969151
ENSG00000223282RN7SKP1657no signal12266336382266339931
ENSG00000143801PSEN27no signal12270578852270838061
ENSG000002286257no signal12273660342273711451
ENSG00000163050ADCK37no signal12270852372271752461
ENSG00000230005SNAP47-AS17no signal1227931532227934892-1
ENSG000002277117no signal1227698297227708178-1
ENSG000002315637no signal12285950822285973951
ENSG000002699347no signal1228462285228463767-1
ENSG00000202056RNA5SP197no signal12287434942287436021
ENSG00000196890HIST3H2BB7no signal12286458082286462591
ENSG00000201588RNA5S27no signal1228748256228748374-1
ENSG000002339207no signal1229359208229363309-1
ENSG000002713997no signal12289937572289943031
ENSG000002269207no signal1229576031229576767-1
ENSG000002374817no signal12294551502294588341
ENSG00000135801TAF5L7no signal1229728858229761794-1
ENSG000002733843no signal11786208411786214171
ENSG00000188585LINC000833no signal1178465031178468769-1
ENSG000002610603no signal11795595071795604401
ENSG000002281913no signal1179240251179240401-1
ENSG00000264916RN7SL230P3no signal11798693971798696971
ENSG00000135847ACBD63no signal1180244515180472089-1
ENSG000002618173no signal1180086275180093025-1
ENSG00000162783IER53no signal11810576381810599771
ENSG000002323093no signal1182096432182097800-1
ENSG00000252977RNA5SP703no signal11817407021817407801
ENSG00000233537TEDDM1P13no signal11824107121824114971
ENSG000002316843no signal11823051361823054751
ENSG00000135824RGS83no signal1182615239182653711-1
ENSG000002611853no signal1182610951182612442-1
ENSG000002647683no signal1182928620182928710-1
ENSG00000199837RNA5SP713no signal1182913500182913625-1
ENSG00000207472RNU6-41P3no signal1182951347182951453-1
ENSG00000232860SMG7-AS13no signal1183430009183440881-1
ENSG00000157064NMNAT23no signal1183217372183387737-1
ENSG00000173627APOBEC43no signal1183615541183622451-1
ENSG000002700093no signal1183589981183590626-1
ENSG00000198756COLGALT23no signal1183898796184006863-1
ENSG00000135842FAM129A3no signal1184759858184943682-1
ENSG000002317913no signal11842982051843019601
ENSG00000213051RPL5P53no signal1185195940185196832-1
ENSG00000232792FTH1P253no signal1185040699185041167-1
ENSG000002283093no signal1185527504185597659-1
ENSG000002066403no signal1185227043185227147-1
ENSG000002246913no signal1186145946186146434-1
ENSG00000116703PDC3no signal1186412698186430254-1
ENSG00000116690PRG43no signal11862654051862836941
ENSG000002731293no signal11866497541866505781
ENSG000002242783no signal1188211270188211809-1
ENSG00000230426ERVMER61-13no signal11876103581876129921
ENSG00000252553RNA5SP733no signal1189635279189635386-1
ENSG000002350833no signal11886404841886408901
ENSG000002382703no signal1189837131189837658-1
ENSG000002258113no signal11902340281903314001
ENSG000002309873no signal1189958700189962227-1
ENSG000002374573no signal11904476811904498651
ENSG000002286873no signal11927656631927663351
ENSG00000253148RGS213no signal11922861221923364151
ENSG000002522413no signal1193700988193701074-1
ENSG000002266403no signal11936480241936961651
ENSG000002317143no signal11943200731943215561
ENSG000002272403no signal11941186031941678241
ENSG00000134365CFHR43no signal11968193711968881021
ENSG00000213046EEF1A1P323no signal11976578901976597571
ENSG00000134376CRB13no signal11971705921974475851
ENSG00000151418ATP6V1G33no signal1198492352198510075-1
ENSG00000143355LHX93no signal11978810371979046081
ENSG00000236278PEBP1P33no signal1198648268198649162-1
ENSG00000233217MROH3P3no signal12008901222009356581
ENSG000002317183no signal11991177261993624351
ENSG00000118194TNNT23no signal1201328136201346890-1
ENSG000002341323no signal12010042242010122011
ENSG00000227109CRIP1P33no signal12020658872020661061
ENSG00000176393RNPEP3no signal12019515002019752751
ENSG000002390463no signal12022007922022008921
ENSG000002349963no signal12028308822028443691
ENSG00000229120CYCSP43no signal1202338654202339273-1
ENSG00000122180MYOG3no signal1203052260203055164-1
ENSG00000117153KLHL123no signal1202860228202897764-1
ENSG000002315073no signal12032562802032579291
ENSG00000260238PMF1-BGLAP7no signal11561827731562131231
ENSG00000254726MEX3A7no signal1156041804156051789-1
ENSG00000163472TMEM797no signal11562527261562629761
ENSG00000160818GPATCH43no signal1156564279156571288-1
ENSG00000187862TTC243no signal11565495191565565621
ENSG00000187800PEAR13no signal11568634901568862261
ENSG00000143319ISG20L23no signal1156691683156698591-1
ENSG00000211581MIR7653no signal1156905923156906036-1
ENSG000001763203no signal1158167712158173667-1
ENSG00000117036ETV33no signal1157090983157108266-1
ENSG00000158485CD1B3no signal1158297741158301321-1
ENSG00000230942HMGN1P53no signal1158236543158237110-1
ENSG00000180409OR10AA1P3no signal1158778189158779125-1
ENSG00000203758OR10T1P3no signal1158414858158415804-1
ENSG00000163564PYHIN13no signal11589005861589468441
ENSG00000249730OR10J43no signal11594019941594029281
ENSG000002655893no signal11590290391590291161
ENSG00000158714SLAMF84no signal11597965401598070391
ENSG00000181036FCRL64no signal11597703011597860411
ENSG00000213085CCDC194no signal1159842154159869953-1
ENSG00000243284VSIG84no signal1159824106159832447-1
ENSG000002374094no signal11599900901599905171
ENSG00000143315PIGM4no signal1159997462160001783-1
ENSG000002607664no signal1159994743159996584-1
ENSG00000162729IGSF84no signal1160061130160068733-1
ENSG00000177807KCNJ104no signal1160007257160040038-1
ENSG00000162739SLAMF64no signal1160454820160493052-1
ENSG000002260034no signal11608178001608182921
ENSG00000117090SLAMF14no signal1160577890160617085-1
ENSG000002249854no signal1161123550161129139-1
ENSG000002681544no signal11610356551610359431
ENSG00000143224PPOX4no signal11611362001611478031
ENSG00000188931C1orf1924no signal1161334521161337664-1
ENSG00000158882TOMM40L4no signal11611957931612004081
ENSG00000171722C1orf1114no signal1162342993162346660-1
ENSG00000132196HSD17B74no signal11627604921627826071
ENSG00000152332UHMK14no signal11624670411624994191
ENSG000002377564no signal11632296401632304491
ENSG00000117152RGS44no signal11630385651630465921
ENSG00000207082RNU6-171P4no signal11646088021646089081
ENSG000002033074no signal11660504201660567201
ENSG000002307484no signal11654669611654675851
ENSG00000152382TADA14no signal1166825747166845564-1
ENSG00000238087FMO8P4no signal11665354151665499421
ENSG000002130684no signal1167131660167132074-1
ENSG000002383254no signal11670106721670107731
ENSG00000117475BLZF14no signal11693372081693657781
ENSG00000215833QRSL1P14no signal1168418910168420449-1
ENSG000002344374no signal1169411876169429690-1
ENSG00000000457SCYL34no signal1169818772169863408-1
ENSG00000171806METTL184no signal1169761670169764107-1
ENSG000002159244no signal1171010488171010581-1
ENSG00000238051ISCUP14no signal1170180151170180598-1
ENSG00000094963FMO24no signal11711543471711818221
ENSG000002521344no signal11717836521717837661
ENSG000002714594no signal1171724943171725463-1
ENSG00000076321KLHL204no signal11736840801737558401
ENSG00000230849GOT2P24no signal1173110239173111489-1
ENSG000002255914no signal11737108131737110671
ENSG00000252552RNU6-307P3no signal11749656611749657661
ENSG00000200674RN7SKP1604no signal11737606861737610251
ENSG000002066593no signal1174991615174991716-1
ENSG00000120333MRPS143no signal1174979925174992561-1
ENSG000002339463no signal11752662161752663761
ENSG00000213240NOTCH2NL5no signal11452091191452919721
ENSG000002727095no signal1145200338145200891-1
ENSG00000121851POLR3GL5no signal1145456236145470388-1
ENSG00000131779PEX11B5no signal11455162521455237301
ENSG00000131795RBM8A5no signal11455075981455135361
ENSG00000198483ANKRD355no signal11455492301455685261
ENSG000002446195no signal1145541593145542229-1
ENSG00000215860PDZK1P15no signal1145924388145942619-1
ENSG000002256035no signal11465223791465240431
ENSG00000198658ABHD17AP25no signal11460768381460800091
ENSG000002277785no signal11475528681475661981
ENSG00000244211PDZK1P25no signal1147466533147481824-1
ENSG000002277005no signal11477184401477189561
ENSG000002728245no signal1147830374147830815-1
ENSG000002381075no signal11477672871477696631
ENSG000002712915no signal1148229952148230238-1
ENSG000002258715no signal11479072151479090361
ENSG00000203832NBPF205no signal1148250249148347506-1
ENSG000002358875no signal11488523931488537171
ENSG000002335865no signal1148760506148761018-1
ENSG000002709625no signal11492790161492793111
ENSG000002640225no signal1149036312149036377-1
ENSG000002334305no signal1149305910149313076-1
ENSG00000252105RNU1-143P5no signal1149286177149286322-1
ENSG00000240929HIST2H2BB5no signal1149369722149399226-1
ENSG00000203818HIST2H3PS25no signal1149400131149400542-1
ENSG000002301865no signal11494000631494293481
ENSG000002696145no signal1149587502149587988-1
ENSG000002680745no signal1149424566149424954-1
ENSG00000202496RNVU1-205no signal11496059171496060791
ENSG00000143374TARS25no signal11504598871504800781
ENSG000002399035no signal11496467851496493021
ENSG00000163131CTSS5no signal1150702672150738433-1
ENSG00000264508RN7SL473P5no signal1150539040150539336-1
ENSG00000197622CDC42SE15no signal1151023447151042801-1
ENSG00000200175RNU6-1309P5no signal1150785067150785174-1
ENSG000002337175no signal1151084388151085204-1
ENSG00000163157TMOD45no signal1151142462151148760-1
ENSG00000163155LYSMD15no signal1151132224151138424-1
ENSG00000143416SELENBP15no signal1151336778151345209-1
ENSG00000159352PSMD45no signal11512271791512399551
ENSG00000143375CGN5no signal11514829861515111681
ENSG000002369405no signal11517301351517309181
ENSG000002528405no signal1151500307151500414-1
ENSG00000143365RORC5no signal1151778547151804348-1
ENSG000002694895no signal11517705301517710781
ENSG00000223810KRT8P285no signal1151921999151923388-1
ENSG00000196407THEM55no signal1151819739151826173-1
ENSG00000197747S100A105no signal1151955391151966866-1
ENSG000002274155no signal11523464301524179321
ENSG00000197915HRNR5no signal1152184558152196669-1
ENSG00000143556S100A77no signal1153430220153433177-1
ENSG00000143536CRNN5no signal1152381719152386739-1
ENSG000001995657no signal1153698728153698829-1
ENSG00000263841RN7SL44P7no signal1153472943153473240-1
ENSG00000264384RN7SL431P7no signal1154138723154139025-1
ENSG000002379207no signal1154349442154351749-1
ENSG00000215938MIR190B7no signal1154166141154166219-1
ENSG00000160685ZBTB7B7no signal11549751271549909981
ENSG00000173171MTX17no signal11551784901551836151
ENSG00000179085DPM37no signal1155112367155113071-1
ENSG00000125459MSTO17no signal11555799791557181531
ENSG000002235037no signal1155560392155561053-1
ENSG000002730027no signal11559485901559527771
ENSG00000170989S1PR13no signal11017024441017070741
ENSG000002715783no signal11016560761016565501
ENSG000002712773no signal11023480721023484501
ENSG00000234257SOD2P13no signal1103565699103566260-1
ENSG00000162699DNAJA1P53no signal11023586611023596031
ENSG000002327533no signal11038177691038283551
ENSG000002307683no signal1106130197106161580-1
ENSG00000240038AMY2B3no signal11040964371041221561
ENSG000002374603no signal11073608611073807891
ENSG000002329523no signal11064343611064361391
ENSG00000085491SLC25A244no signal1108676658108743471-1
ENSG000002245503no signal11080478251080480701
ENSG00000196427NBPF44no signal1108765963108786689-1
ENSG00000162641AKNAD14no signal1109358520109506106-1
ENSG00000134186PRPF38B4no signal11092349451092444251
ENSG00000215717TMEM167B4no signal11096324251096395561
ENSG00000121957GPSM24no signal11094179721094771671
ENSG00000143028SYPL24no signal11100091801100247591
ENSG00000270066SCARNA24no signal11096428151096432411
ENSG000002251134no signal11101388471101404031
ENSG000002602464no signal1110235739110236364-1
ENSG00000213366GSTM24no signal11102106441102521711
ENSG00000143093STRIP14no signal11105741991106172631
ENSG00000134201GSTM54no signal11102548641103180501
ENSG000002586734no signal11106253101106523411
ENSG000002354074no signal1111030302111032880-1
ENSG000002733734no signal11109127761109156251
ENSG000002729824no signal1111723996111724113-1
ENSG00000134255CEPT14no signal11116822491117277241
ENSG00000155367PPM1J4no signal1113252616113258099-1
ENSG00000162777DENND2D4no signal1111729796111747157-1
ENSG000002158664no signal1113362792113393265-1
ENSG000002381984no signal1113554309113615727-1
ENSG00000229020AKR7A2P14no signal11134660451134669591
ENSG00000118655DCLRE1B4no signal11144477631144567081
ENSG00000052723SIKE14no signal1115312100115323306-1
ENSG000002714194no signal11148966081148978001
ENSG00000134200TSHB4no signal11155724151155769411
ENSG00000198765SYCP14no signal11153974241155379911
ENSG00000134259NGF4no signal1115828539115880857-1
ENSG000002706314no signal1116119850116120407-1
ENSG000002655344no signal11160282721160283641
ENSG00000264419MIR548AC4no signal1117102646117102733-1
ENSG00000116824CD24no signal11172970071173118501
ENSG000002385324no signal1117134728117134821-1
ENSG00000134258VTCN14no signal1117686209117753556-1
ENSG00000252510RNA5SP554no signal1117504969117505093-1
ENSG000002326504no signal11198707991198988051
ENSG000002261724no signal1119542967119544015-1
ENSG00000229570GAPDHP584no signal1120038459120039464-1
ENSG00000187481HSD3BP14no signal11200098441200164261
ENSG00000198857HSD3BP54no signal11201439631201518731
ENSG00000134249ADAM304no signal1120436156120439118-1
ENSG00000226446NOTCH2P14no signal11204289271204295501
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