Cell Line Synopsis
Cell Line Overview
Mutations
Copy Number Variation
Gene Expression
RNAi
Compound Sensitivity Profile
Similar Cell Lines

NAMALWA - Copy Number Variation - Cell Line Synopsis

External Data Sources:COSMIC - Cell Lines Project
Genome Average Copy Number: 3.28
Chromosome Average Copy Number: 1.09

Regions

Chromosome Genome Start Genome Stop Copy Number Signal
Y373724238275320loss
Y28190910283924783no signal
Y265043929440840loss
Y550578056777200loss
Y23653243237656505no signal
Y24177819242549706no signal
Y28392699286907380loss
Y663269567857570loss
Y26314109264820896no signal
Y883849688938182no signal
Y17627479176797932no signal
Y14051688141051102no signal
Y778541578093943no signal
Y18264463183560302no signal
Y58969133589693070loss
Y28695616287581103no signal
Y28758193287999360loss
Y590441166292271loss
Y26054089263110900loss
Y9929689138009293no signal
Y23599412236531990loss
Y25920167260538783no signal
Y837557684796912no signal
Y889643194654120loss
Y24269189259195990loss
Y23766155239895470loss
Y19853658202810130loss
Y19797645198264790loss
Y20438025206435013no signal
Y27580594281807580loss
Y19627924197851844no signal
Y21126392214132652no signal
Y58967865589691218no signal
Y404088643723612no signal
Y26513716275802903no signal
Y294602633857021loss
Y338610435901640loss
Y359179937353132no signal
Y383753539347903no signal
Y393659240345580loss
Y438600644723330loss
Y447259351484051loss
Y514913651819380loss
Y518380454981792no signal
Y567773158524753no signal
Y585354858975450loss
Y678605769917362no signal
Y699244777821520loss
Y780965181054520loss
Y810634082081532no signal
Y820843783733840loss
Y847996488332260loss
Y946678096485514no signal
Y964874099277230loss
Y13870909140510040loss
Y14109585143930880loss
Y14393597146223592no signal
Y14622482167123620loss
Y16713287167421063no signal
Y16742224173559330loss
Y17357900175503941loss
Y17551265176239510loss
Y17680123182640380loss
Y18356887196270140loss
Y19828328198525447no signal
Y20281546203359034no signal
Y20336319204370300loss
Y20651384211250380loss
Y21413790215944950loss
Y21604523216549652no signal
Y21657490228881770loss
Y22889694229729392no signal
Y22973022232434160loss
Y23247791233647831loss
Y23366923235658000loss
Y23568995235990712no signal
Y23990231240041922no signal
Y24005360241197800loss
Y26482388265108000loss
Y58969309590054355no signal
Y59005454590056460loss
Y59005650590328094no signal

Genes

Ensembl Gene Gene Name(s) Copy Number Signal Chromosome Start Stop Strand
ENSG00000251841RNU6-1334P0lossY265279026528941
ENSG00000231535LINC002780lossY287095329703131
ENSG00000227289HSFY3P0lossY27497242751693-1
ENSG00000129824RPS4Y10lossY270952728000411
ENSG00000223744RBMY2GP1lossY619609362113641
ENSG00000235001EIF4A1P22no signalY52057865207005-1
ENSG00000231341VDAC1P61lossY50752565076110-1
ENSG00000252900RNU6-303P2no signalY40430264043131-1
ENSG00000238154USP9YP40lossY90272389042220-1
ENSG00000234179MTCYBP10lossY823207382331911
ENSG00000223955MTND6P10lossY82315778232000-1
ENSG00000227204RBMY2JP0lossY799517180122441
ENSG00000129845TTTY14no signalY95907659611898-1
ENSG00000183385TTTY84no signalY952870995315661
ENSG00000228927TSPY30lossY923603093073571
ENSG00000215583ASS1P60lossY1404324214044475-1
ENSG000002705703no signalY1326339513263563-1
ENSG000002713093no signalY1326306513263272-1
ENSG00000225685TSPY5P0lossY99041639906760-1
ENSG00000236131MED13P10lossY17019778170199481
ENSG00000241859KALP0lossY15863536160277041
ENSG00000223915DPPA2P10lossY15342765153433201
ENSG00000227447XGPY2no signalY1455184514619171-1
ENSG00000252315RNA5SP5204no signalY19669744196698561
ENSG00000271595TCEB1P350lossY1957675919577094-1
ENSG000002526640lossY18174646181747091
ENSG00000224033CDY8P0lossY20134179201357881
ENSG00000229138CDY6P0lossY1999397919995588-1
ENSG00000235521USP9YP270lossY1990019519901364-1
ENSG00000237427TOMM22P11lossY23292756232930671
ENSG00000131002TXLNG2P0lossY21729199217681601
ENSG00000230904XKRYP20lossY2097322420973715-1
ENSG00000238067XKRYP10lossY20670463206709541
ENSG00000232475HSFY5P6no signalY2419470124195494-1
ENSG00000230029CDY11P0lossY23858456238601061
ENSG00000237023USP9YP30lossY23823812238358941
ENSG00000232634NEFLP10lossY2338299223383975-1
ENSG000002369516no signalY2424696124293631-1
ENSG00000169807PRY26no signalY2421790324242154-1
ENSG00000232029TCEB1P156no signalY24214967242152981
ENSG00000228571HSFY7P0lossY24683194246839961
ENSG00000237902TSPY21P0lossY2454655024548715-1
ENSG00000215560TTTY50lossY2444294524445023-1
ENSG00000229234RBMY1KP0lossY24355478243627271
ENSG00000237467USP9YP350lossY26223946262259591
ENSG00000224571USP9YP130lossY26066052260676571
ENSG00000225189REREP1Y0lossY25608612256184271
ENSG00000227251TRIM60P9Y0lossY25204177252053331
ENSG00000224210TRIM60P5Y3no signalY2664085626641730-1
ENSG000002309776no signalY26328624263292181
ENSG00000223698GOLGA6L11P6no signalY26314334263206411
ENSG00000223978ZNF736P1Y3no signalY2713134827132623-1
ENSG00000227837TRIM60P11Y3no signalY26837938268390791
ENSG00000226270ZNF736P2Y3no signalY26829804268310821
ENSG00000232976TRIM60P10Y3no signalY26805484268065531
ENSG00000235004USP9YP300lossY27869163278703331
ENSG000002355830lossY2765844827673933-1
ENSG000002524710lossY27606157276062391
ENSG00000229238PPP1R12BP10lossY2842407028500565-1
ENSG00000235014REREP2Y3no signalY2834447828354295-1
ENSG00000235451PNPLA4P10lossY16192955161984801
ENSG00000129862VCY1B0lossY16168097161688381
ENSG000002692910lossY15418467154291811
ENSG00000234059CASKP10lossY1504207515060090-1
ENSG00000234620HDHD1P11lossY1746054217567954-1
ENSG00000226555AGKP10lossY16750976167522381
ENSG00000165246NLGN4Y0lossY16634518169575301
ENSG00000232744USP9YP164no signalY2028308120285685-1
ENSG00000182415CDY2A0lossY20137667201404771
ENSG00000230663FAM224B4no signalY1966468019691634-1
ENSG00000228578TUBB1P24no signalY1962871619630918-1
ENSG00000225716TCEB1P133no signalY20602683206030111
ENSG00000251953RNA5SP5223no signalY2050800920508124-1
ENSG00000229302TAF9P23no signalY2043849320439381-1
ENSG00000226504TMEM167AP10lossY2306923023069448-1
ENSG000002677930lossY21760074217606431
ENSG00000251970RNU1-41P0lossY2099561520995776-1
ENSG00000224151USP9YP280lossY2099488821001199-1
ENSG00000242389RBMY1E0lossY2402622324064214-1
ENSG00000271123TCEB1P50lossY2379356923793901-1
ENSG000002544880lossY2320017523206610-1
ENSG00000228850CDY12P6no signalY24210845242118591
ENSG00000231159OFD1P8Y0lossY24118460241514961
ENSG000002274440lossY24065082240672531
ENSG00000244395RBMY1D0lossY2402622324040673-1
ENSG00000259247TTTY25P0lossY24476599244786471
ENSG00000226941RBMY1J0lossY24454970245640281
ENSG00000229940TSPY22P0lossY2445207224454098-1
ENSG00000233126ZNF736P3Y0lossY25195394251973421
ENSG00000183753BPY20lossY25119966251516121
ENSG00000230727RBMY2WP0lossY2490899824915934-1
ENSG00000224657RBMY2BP0lossY24795392248050251
ENSG00000232910RAB9AP10lossY25897335258979071
ENSG00000224169HSFY6P0lossY2580398625805205-1
ENSG000002155400lossY2568345525693089-1
ENSG00000234081TCEB1P100lossY2615305826153384-1
ENSG00000228465TRAPPC2P100lossY2611371126116841-1
ENSG00000237302OFD1P11Y0lossY25917379259442971
ENSG00000227439TTTY17B3no signalY26631479266326101
ENSG00000234399RBMY2XP3no signalY2654275126549673-1
ENSG00000239533GOLGA2P2Y6no signalY2635611426360978-1
ENSG00000229250USP9YP310lossY2622785126236493-1
ENSG00000240450CSPG4P1Y0lossY27629055276328521
ENSG00000230819ZNF736P5Y3no signalY2716464627165450-1
ENSG00000205916DAZ43no signalY26980008270531831
ENSG000002405663no signalY26796955267976811
ENSG00000227867TCEB1P110lossY2813738828137719-1
ENSG00000225287OFD1P13Y0lossY2782120727843493-1
ENSG000002336190lossY2763343127633809-1
ENSG00000237917PARP4P13no signalY2874099828780799-1
ENSG00000215507RBMY2DP3no signalY28269821282794551
ENSG00000234744USP9YP260lossY28148401281550031
ENSG00000237195DLGAP5P11lossY602684360273061
ENSG000002519960lossY720957272096831
ENSG00000252633RN7SKP2820lossY71923387192636-1
ENSG00000212856TTTY2B1lossY62742856292186-1
ENSG00000238235TSPY11P1lossY613463461373161
ENSG00000180910TTTY110lossY86513518685423-1
ENSG00000227830TRIM60P3Y0lossY82810788282095-1
ENSG00000215601TSPY24P2no signalY814823981502501
ENSG00000235649MXRA5P12no signalY14077914141080921
ENSG000002713753no signalY1362940313629913-1
ENSG000002635023no signalY1334035913340440-1
ENSG00000224075TTTY224no signalY963876296508541
ENSG00000238074TSPY6P0lossY932492293276891
ENSG00000226863SHROOM2P10lossY14649708146568181
ENSG000002525862no signalY14482123144822301
ENSG00000225117ARSDP12no signalY14474827144991231
ENSG000002508680lossY1988086219889280-1
ENSG00000236599TCEB1P260lossY2034081820341146-1
ENSG00000231311PRYP24no signalY20323252203383701
ENSG00000230412TCEB1P120lossY20230369202306961
ENSG00000224485USP9YP70lossY20020635200226861
ENSG00000249501USP9YP20lossY2093816520941313-1
ENSG00000236429GPM6BP20lossY2090372920903872-1
ENSG000002524393no signalY20444739204448331
ENSG00000229159TSPY23P0lossY24329997243321681
ENSG000002168440lossY2300514223005596-1
ENSG00000229236TTTY100lossY2262755422681114-1
ENSG00000238088OFD1P7Y0lossY21010150210291661
ENSG00000169763PRYP30lossY2582758725840726-1
ENSG00000227915TCEB1P160lossY25824651258249821
ENSG00000226873CDY14P0lossY25820526258215391
ENSG00000131538TTTY60lossY2458574024587605-1
ENSG00000231423RAB9AP50lossY26102716261063651
ENSG00000226369USP9YP110lossY26081100260862481
ENSG00000232845TRAPPC2P90lossY2590898525911730-1
ENSG00000227633RBMY2YP3no signalY27412731274196781
ENSG00000185894BPY2C3no signalY2717704827208695-1
ENSG000001723326no signalY2635571426361728-1
ENSG00000172342CSPG4P3Y6no signalY2633265626338017-1
ENSG00000225609CDY20P0lossY27764791277664001
ENSG00000232064USP9YP330lossY2773647027738492-1
ENSG00000228786LINC00266-4P3no signalY2752444727540866-1
ENSG00000232695TCEB1P170lossY28007090280074151
ENSG00000231141TTTY30lossY27874637278795351
ENSG00000252426RNU1-107P0lossY27869489278696421
ENSG00000270535TCEB1P340lossY27809047278093731
ENSG00000234888OFD1P15Y3no signalY2820192628234640-1
ENSG00000231716CDY23P0lossY2814083128141844-1
ENSG00000235511OFD1P18Y0lossY2801807828044800-1
ENSG00000231514FAM58CP0lossY2877266728773306-1
ENSG00000215506TPTE2P40lossY28654360287258371
ENSG00000233843CYCSP480lossY28546758285473771
ENSG00000067646ZFY0lossY280311228505471
ENSG000002520592no signalY544196954420601
ENSG00000232927USP12PY0lossY355084635519091
ENSG00000234652AGPAT5P11lossY316184931628671
ENSG00000237563TTTY21B1lossY631147563151181
ENSG000002502041lossY61113366113324-1
ENSG00000237069TTTY23B1lossY61104876111651-1
ENSG00000236435TSPY12P0lossY75557807557589-1
ENSG00000092377TBL1Y0lossY677872769597241
ENSG00000232620TSPY17P1lossY638850463889701
ENSG00000185700TTTY8B1lossY63388146341671-1
ENSG00000225809RBMY2KP2no signalY81324908145229-1
ENSG00000215603ZNF92P1Y0lossY77217277722917-1
ENSG00000237048TTTY120lossY767296576787241
ENSG000002366900lossY755855275607191
ENSG00000224336FAM197Y10lossY93742419384693-1
ENSG00000233803TSPY40lossY917507391778931
ENSG00000226529MTND1P10lossY823970482400711
ENSG00000258567DUX4L163no signalY13462594134638571
ENSG00000251705RNA5-8SP63no signalY10037764100379151
ENSG000002258403no signalY1003611310036711-1
ENSG00000187657TSPY13P0lossY97432049745748-1
ENSG00000224035SFPQP10lossY15195704152077191
ENSG00000206159GYG2P12no signalY1447514714532255-1
ENSG00000224060ARSEP12no signalY14460540144682261
ENSG00000258991DUX4L193no signalY13488005134892711
ENSG00000229129ACTG1P20lossY1986888119870005-1
ENSG00000226449CDY5P7no signalY19833478198350571
ENSG000002526890lossY1825012818250259-1
ENSG00000227166STSP12no signalY17659096177052111
ENSG00000224964TRAPPC2P30lossY1990986319912576-1
ENSG00000223555USP9YP230lossY19894090198966951
ENSG00000176679TGIF2LY0lossY344708234480821
ENSG00000223600EEF1A1P410lossY28631082863314-1
ENSG00000229163NAP1L1P20lossY27970422799161-1
ENSG00000214207KRT18P102no signalY544118654424721
ENSG00000099715PCDH11Y1lossY486826756102651
ENSG000002184102no signalY37192653720910-1
ENSG00000234830FAM197Y91lossY61243086131994-1
ENSG000002512751lossY61098096111670-1
ENSG000002518793no signalY574228757423791
ENSG00000235175RPL26P370lossY56613415661778-1
ENSG00000099721AMELY0lossY67339596742068-1
ENSG00000129816TTTY1B1lossY625847262796051
ENSG000002350941lossY617408361759611
ENSG00000229745BPY2DP3no signalY78010387805681-1
ENSG00000225520TTTY160lossY75673987569288-1
ENSG00000252472RNU6-521P0lossY72910957291199-1
ENSG00000237701ATP5JP10lossY676879467694131
ENSG00000216824ZNF736P10Y0lossY82868328287941-1
ENSG00000224634ZNF736P6Y0lossY821897282201841
ENSG00000239893ZNF736P9Y0lossY79369377938764-1
ENSG00000241200ZNF736P7Y0lossY78590287859847-1
ENSG00000197038RBMY1A3P0lossY91487399160483-1
ENSG00000232235CDY3P0lossY90036949005311-1
ENSG00000232419TTTY190lossY857251385733241
ENSG00000232348LINC002790lossY850633585128831
ENSG00000236786TSPY15P0lossY938571793882901
ENSG000002255160lossY92930129344176-1
ENSG00000225560FAM197Y80lossY91851209193010-1
ENSG00000239225TTTY230lossY974840797495711
ENSG00000231874TSPY18P0lossY970727397083901
ENSG00000212855TTTY24no signalY957819395960851
ENSG000002326174no signalY950283895066191
ENSG00000226061PCMTD1P13no signalY10011462100118161
ENSG000002314113no signalY1000919910010334-1
ENSG00000252289RNA5SP5193no signalY99304849930602-1
ENSG00000183704SLC9B1P13no signalY1349624113524717-1
ENSG00000259029DUX4L183no signalY13477233134784991
ENSG000002713653no signalY1326274113262939-1
ENSG000002519663no signalY10033981100340931
ENSG00000215414PSMA6P10lossY15398518153992581
ENSG00000067048DDX3Y0lossY15016019150323901
ENSG00000114374USP9Y0lossY14813160149727641
ENSG00000234385RCC2P10lossY1390175813903233-1
ENSG00000228787NLGN4Y-AS10lossY1690552216915913-1
ENSG00000129864VCY0lossY1609765216098393-1
ENSG00000154620TMSB4Y0lossY15815447158179041
ENSG00000224989FAM41AY10lossY19612838196268981
ENSG00000228518SURF6P10lossY19304706193055321
ENSG00000252323RNU6-184P0lossY1844816318448269-1
ENSG00000252173RNU6-109P0lossY18360815183609211
ENSG00000224166PRYP17no signalY1984140819856476-1
ENSG00000226353TAF9P14no signalY19740393197412821
ENSG00000238191CLUHP14no signalY1973313919737712-1
ENSG00000228945CLUHP23no signalY20442064204466471
ENSG00000237558CDY7P0lossY20063469200653801
ENSG00000226011OFD1P1Y0lossY19921687199372091
ENSG00000252513RNU1-128P0lossY1990088319901042-1
ENSG00000249634USP9YP50lossY2065280120656181-1
ENSG00000227494USP9YP143no signalY20642973206492861
ENSG00000226362FAM41AY23no signalY2055288020566932-1
ENSG00000252667RNA5SP5233no signalY2050992120510033-1
ENSG00000217896ZNF839P12no signalY21147061211482841
ENSG00000238135USP9YP100lossY20987993209913731
ENSG00000233546PRYP50lossY20691244206915091
ENSG00000229551GAPDHP170lossY23023223230242231
ENSG00000232522ZNF886P0lossY2216307122174090-1
ENSG00000237997RCC2P20lossY2214846122149738-1
ENSG00000185275CD24P42no signalY2115435321154595-1
ENSG00000169811RBMY1HP5no signalY23655405236638541
ENSG00000169849TSPY14P0lossY23630044236325691
ENSG00000183146CYorf170lossY2354484023548246-1
ENSG00000169800RBMY1F0lossY2431468924329129-1
ENSG00000131548TTTY6B0lossY24291113242929781
ENSG000002297250lossY24017478240196971
ENSG000002423935no signalY2367018523672356-1
ENSG00000230814USP9YP240lossY24674428246827861
ENSG000002350590lossY24585087246317391
ENSG00000243040RBMY2FP0lossY24455006244679721
ENSG00000205944DAZ20lossY25365594254375031
ENSG00000232764TRIM60P8Y0lossY25171741251728101
ENSG000002249170lossY2481676324819006-1
ENSG00000230476OFD1P9Y0lossY2472713624760228-1
ENSG000002679350lossY25847479258505921
ENSG000002366470lossY25695956256975321
ENSG000002300730lossY25669468256715161
ENSG000002519250lossY2556924625569383-1
ENSG00000231026XKRYP40lossY2606338826063870-1
ENSG00000252681RNU1-97P0lossY2588708925887252-1
ENSG00000232424USP9YP290lossY2588640525892840-1
ENSG000002359810lossY26288505263039901
ENSG00000232205CDY18P0lossY26250254262521651
ENSG00000231375CDY17P0lossY2619602526197634-1
ENSG00000227871USP9YP120lossY2609207426098440-1
ENSG00000235412TTTY4B3no signalY26716349267531721
ENSG00000225491UBE2Q2P4Y6no signalY2637897326385131-1
ENSG00000242425RN7SL818P6no signalY2635710726357382-1
ENSG00000242854DNM1P246no signalY2632546326329652-1
ENSG00000223636UBE2Q2P5Y3no signalY27577303275834621
ENSG00000233652CICP13no signalY27535139275379581
ENSG00000183795BPY2B3no signalY26753707267853541
ENSG00000172294CSPG4P4Y0lossY27624416276328521
ENSG000002720420lossY27605054276053291
ENSG00000172297GOLGA2P3Y0lossY27600708276067191
ENSG00000223655RAB9AP30lossY2806447028065042-1
ENSG00000229343CDY22P0lossY27959160279607131
ENSG00000225326USP9YP190lossY2789474327896353-1
ENSG00000232614USP9YP90lossY2787615827881307-1
ENSG000002517960lossY28393531283936681
ENSG00000230854USP9YP200lossY28069535280759731
ENSG00000252766RNU6-255P2no signalY2118086921180973-1
ENSG00000229553USP9YP176no signalY2419590224204260-1
ENSG00000184991TTTY135no signalY2374548623756552-1
ENSG000002279895no signalY2371773823719956-1
ENSG00000157828RPS4Y22no signalY22918050229429181
ENSG00000223362CDY15P3no signalY2600166926003238-1
ENSG00000224866USP9YP250lossY25880340258823961
ENSG00000228240TTTY17A0lossY24997731249988621
ENSG00000224873CDY13P0lossY2466682824667842-1
ENSG00000233944LINC00265-3P3no signalY2753930127540203-1
ENSG00000223641TTTY17C3no signalY2732979027330920-1
ENSG00000232585OFD1P12Y0lossY26118927261412281
ENSG00000232914TRAPPC2P40lossY28050665280533971
ENSG00000223406XKRYP50lossY27898535278990171
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