Cell Line Synopsis
Cell Line Overview
Mutations
Copy Number Variation
Gene Expression
RNAi
Compound Sensitivity Profile
Similar Cell Lines

CCRF-CEM - Copy Number Variation - Cell Line Synopsis

External Data Sources:COSMIC - Cell Lines Project
Genome Average Copy Number: 1.98
Chromosome Average Copy Number: 0.25

Regions

Chromosome Genome Start Genome Stop Copy Number Signal
Y23653348237656502no signal
Y28190910283924781no signal
Y952591596338662no signal
Y374373938275320loss
Y550578056777200loss
Y13800929144199120loss
Y17545186175456084no signal
Y21159055212130570loss
Y21139399211560622no signal
Y383753540068582no signal
Y590441159650051no signal
Y265043929460260loss
Y295132433403362no signal
Y567773156801643no signal
Y661268767823870loss
Y21213433214107721no signal
Y28392699286891290loss
Y964855199277230loss
Y24177819243067171no signal
Y421769043503390loss
Y14420377144269993no signal
Y26054089262305120loss
Y841933684796911no signal
Y9929689134105392no signal
Y27690967281807580loss
Y20643501211375470loss
Y651268265374550loss
Y654449066085682no signal
Y847996495257450loss
Y499928554981791no signal
Y19627924200974741no signal
Y58968589590328092no signal
Y401148840305800loss
Y596516361351480loss
Y20254981206430921no signal
Y568133758975450loss
Y20097646202543520loss
Y23766155239812360loss
Y403058442174361no signal
Y21413265236532430loss
Y17549728196270140loss
Y14427853144842040loss
Y14484289145117091no signal
Y24020772241197800loss
Y17515685175441990loss
Y28782094589685040loss
Y678509569211351no signal
Y334081235923030loss
Y359485837403141no signal
Y14512869174353520loss
Y17435976175125241no signal
Y23981778240205221no signal
Y24306932256013920loss
Y25607550260538781no signal
Y26238657276909111no signal
Y28690738287819301no signal
Y435352047039841no signal
Y470436749979760loss
Y613546465082441no signal
Y692382484189270loss

Genes

Ensembl Gene Gene Name(s) Copy Number Signal Chromosome Start Stop Strand
ENSG00000229234RBMY1KP0lossY24355478243627271
ENSG000002369511no signalY2424696124293631-1
ENSG00000169807PRY21no signalY2421790324242154-1
ENSG00000232029TCEB1P151no signalY24214967242152981
ENSG00000232475HSFY5P1no signalY2419470124195494-1
ENSG00000230029CDY11P0lossY23858456238601061
ENSG00000237023USP9YP30lossY23823812238358941
ENSG00000232634NEFLP10lossY2338299223383975-1
ENSG00000237427TOMM22P10lossY23292756232930671
ENSG00000131002TXLNG2P0lossY21729199217681601
ENSG00000230904XKRYP20lossY2097322420973715-1
ENSG00000238067XKRYP10lossY20670463206709541
ENSG00000224033CDY8P0lossY20134179201357881
ENSG00000229138CDY6P1no signalY1999397919995588-1
ENSG00000235521USP9YP271no signalY1990019519901364-1
ENSG00000252315RNA5SP5201no signalY19669744196698561
ENSG00000271595TCEB1P350lossY1957675919577094-1
ENSG000002526640lossY18174646181747091
ENSG00000236131MED13P10lossY17019778170199481
ENSG00000241859KALP0lossY15863536160277041
ENSG00000223915DPPA2P10lossY15342765153433201
ENSG00000227447XGPY0lossY1455184514619171-1
ENSG00000215583ASS1P60lossY1404324214044475-1
ENSG000002705702no signalY1326339513263563-1
ENSG000002713092no signalY1326306513263272-1
ENSG00000225685TSPY5P0lossY99041639906760-1
ENSG00000129845TTTY12no signalY95907659611898-1
ENSG00000183385TTTY82no signalY952870995315661
ENSG00000228927TSPY30lossY923603093073571
ENSG00000238154USP9YP40lossY90272389042220-1
ENSG00000234179MTCYBP10lossY823207382331911
ENSG00000223955MTND6P10lossY82315778232000-1
ENSG00000227204RBMY2JP0lossY799517180122441
ENSG00000223744RBMY2GP1no signalY619609362113641
ENSG00000235001EIF4A1P21no signalY52057865207005-1
ENSG00000231341VDAC1P61no signalY50752565076110-1
ENSG00000252900RNU6-303P1no signalY40430264043131-1
ENSG00000231535LINC002780lossY287095329703131
ENSG00000227289HSFY3P0lossY27497242751693-1
ENSG00000129824RPS4Y10lossY270952728000411
ENSG00000251841RNU6-1334P0lossY265279026528941
ENSG00000229238PPP1R12BP10lossY2842407028500565-1
ENSG00000235014REREP2Y1no signalY2834447828354295-1
ENSG00000235004USP9YP300lossY27869163278703331
ENSG000002355831no signalY2765844827673933-1
ENSG000002524711no signalY27606157276062391
ENSG00000223978ZNF736P1Y1no signalY2713134827132623-1
ENSG00000227837TRIM60P11Y1no signalY26837938268390791
ENSG00000226270ZNF736P2Y1no signalY26829804268310821
ENSG00000232976TRIM60P10Y1no signalY26805484268065531
ENSG00000224210TRIM60P5Y1no signalY2664085626641730-1
ENSG000002309771no signalY26328624263292181
ENSG00000223698GOLGA6L11P1no signalY26314334263206411
ENSG00000237467USP9YP350lossY26223946262259591
ENSG00000225189REREP1Y1no signalY25608612256184271
ENSG00000224571USP9YP130lossY26066052260676571
ENSG00000227251TRIM60P9Y0lossY25204177252053331
ENSG00000228571HSFY7P0lossY24683194246839961
ENSG00000237902TSPY21P0lossY2454655024548715-1
ENSG00000215560TTTY50lossY2444294524445023-1
ENSG00000224169HSFY6P1no signalY2580398625805205-1
ENSG000002155401no signalY2568345525693089-1
ENSG00000233126ZNF736P3Y0lossY25195394251973421
ENSG00000183753BPY20lossY25119966251516121
ENSG00000230727RBMY2WP0lossY2490899824915934-1
ENSG00000224657RBMY2BP0lossY24795392248050251
ENSG00000259247TTTY25P0lossY24476599244786471
ENSG00000226941RBMY1J0lossY24454970245640281
ENSG00000229940TSPY22P0lossY2445207224454098-1
ENSG00000228850CDY12P1no signalY24210845242118591
ENSG00000231159OFD1P8Y0lossY24118460241514961
ENSG000002274440lossY24065082240672531
ENSG00000244395RBMY1D0lossY2402622324040673-1
ENSG00000242389RBMY1E0lossY2402622324064214-1
ENSG00000271123TCEB1P50lossY2379356923793901-1
ENSG000002366150lossY23567656235678811
ENSG000002544880lossY2320017523206610-1
ENSG00000226504TMEM167AP10lossY2306923023069448-1
ENSG000002677930lossY21760074217606431
ENSG00000251970RNU1-41P0lossY2099561520995776-1
ENSG00000224151USP9YP280lossY2099488821001199-1
ENSG00000225716TCEB1P131no signalY20602683206030111
ENSG00000251953RNA5SP5221no signalY2050800920508124-1
ENSG00000229302TAF9P21no signalY2043849320439381-1
ENSG00000232744USP9YP161no signalY2028308120285685-1
ENSG00000182415CDY2A0lossY20137667201404771
ENSG00000230663FAM224B1no signalY1966468019691634-1
ENSG00000228578TUBB1P21no signalY1962871619630918-1
ENSG00000234620HDHD1P11no signalY1746054217567954-1
ENSG00000226555AGKP10lossY16750976167522381
ENSG00000165246NLGN4Y0lossY16634518169575301
ENSG00000235451PNPLA4P10lossY16192955161984801
ENSG00000129862VCY1B0lossY16168097161688381
ENSG000002692910lossY15418467154291811
ENSG00000234059CASKP10lossY1504207515060090-1
ENSG00000226863SHROOM2P10lossY14649708146568181
ENSG000002525860lossY14482123144822301
ENSG00000225117ARSDP10lossY14474827144991231
ENSG00000235649MXRA5P10lossY14077914141080921
ENSG000002635022no signalY1334035913340440-1
ENSG00000238074TSPY6P0lossY932492293276891
ENSG00000180910TTTY110lossY86513518685423-1
ENSG00000227830TRIM60P3Y0lossY82810788282095-1
ENSG00000215601TSPY24P0lossY814823981502501
ENSG000002519960lossY720957272096831
ENSG00000252633RN7SKP2820lossY71923387192636-1
ENSG00000212856TTTY2B1no signalY62742856292186-1
ENSG00000238235TSPY11P0lossY613463461373161
ENSG00000237195DLGAP5P10lossY602684360273061
ENSG00000237917PARP4P11no signalY2874099828780799-1
ENSG00000224240CYCSP491no signalY28695572286958901
ENSG00000215507RBMY2DP1no signalY28269821282794551
ENSG00000234744USP9YP260lossY28148401281550031
ENSG00000227867TCEB1P110lossY2813738828137719-1
ENSG00000225287OFD1P13Y0lossY2782120727843493-1
ENSG000002336191no signalY2763343127633809-1
ENSG00000240450CSPG4P1Y1no signalY27629055276328521
ENSG00000230819ZNF736P5Y1no signalY2716464627165450-1
ENSG00000205916DAZ41no signalY26980008270531831
ENSG000002405661no signalY26796955267976811
ENSG00000227439TTTY17B1no signalY26631479266326101
ENSG00000234399RBMY2XP1no signalY2654275126549673-1
ENSG00000239533GOLGA2P2Y1no signalY2635611426360978-1
ENSG00000229250USP9YP310lossY2622785126236493-1
ENSG00000234081TCEB1P100lossY2615305826153384-1
ENSG00000228465TRAPPC2P100lossY2611371126116841-1
ENSG00000237302OFD1P11Y1no signalY25917379259442971
ENSG00000232910RAB9AP11no signalY25897335258979071
ENSG00000224035SFPQP10lossY15195704152077191
ENSG00000206159GYG2P10lossY1447514714532255-1
ENSG00000224060ARSEP10lossY14460540144682261
ENSG00000251705RNA5-8SP62no signalY10037764100379151
ENSG000002258402no signalY1003611310036711-1
ENSG00000187657TSPY13P0lossY97432049745748-1
ENSG00000224336FAM197Y10lossY93742419384693-1
ENSG00000233803TSPY40lossY917507391778931
ENSG00000226529MTND1P10lossY823970482400711
ENSG00000225809RBMY2KP0lossY81324908145229-1
ENSG00000215603ZNF92P1Y0lossY77217277722917-1
ENSG00000237048TTTY120lossY767296576787241
ENSG000002366900lossY755855275607191
ENSG00000236435TSPY12P0lossY75557807557589-1
ENSG00000092377TBL1Y0lossY677872769597241
ENSG00000232620TSPY17P1no signalY638850463889701
ENSG00000185700TTTY8B1no signalY63388146341671-1
ENSG00000237563TTTY21B1no signalY631147563151181
ENSG000002502040lossY61113366113324-1
ENSG00000237069TTTY23B0lossY61104876111651-1
ENSG000002520591no signalY544196954420601
ENSG00000232927USP12PY0lossY355084635519091
ENSG00000067646ZFY0lossY280311228505471
ENSG00000234652AGPAT5P12no signalY316184931628671
ENSG00000231514FAM58CP1no signalY2877266728773306-1
ENSG00000215506TPTE2P40lossY28654360287258371
ENSG00000233843CYCSP480lossY28546758285473771
ENSG00000234888OFD1P15Y1no signalY2820192628234640-1
ENSG00000231716CDY23P0lossY2814083128141844-1
ENSG00000235511OFD1P18Y0lossY2801807828044800-1
ENSG00000232695TCEB1P170lossY28007090280074151
ENSG00000231141TTTY30lossY27874637278795351
ENSG00000252426RNU1-107P0lossY27869489278696421
ENSG00000270535TCEB1P340lossY27809047278093731
ENSG00000225609CDY20P0lossY27764791277664001
ENSG00000228786LINC00266-4P1no signalY2752444727540866-1
ENSG00000232064USP9YP330lossY2773647027738492-1
ENSG00000227633RBMY2YP1no signalY27412731274196781
ENSG00000185894BPY2C1no signalY2717704827208695-1
ENSG000001723321no signalY2635571426361728-1
ENSG00000172342CSPG4P3Y1no signalY2633265626338017-1
ENSG00000231423RAB9AP50lossY26102716261063651
ENSG00000232845TRAPPC2P91no signalY2590898525911730-1
ENSG00000226369USP9YP110lossY26081100260862481
ENSG00000169763PRYP31no signalY2582758725840726-1
ENSG00000227915TCEB1P161no signalY25824651258249821
ENSG00000226873CDY14P1no signalY25820526258215391
ENSG00000131538TTTY60lossY2458574024587605-1
ENSG00000229159TSPY23P0lossY24329997243321681
ENSG000002168440lossY2300514223005596-1
ENSG00000229236TTTY100lossY2262755422681114-1
ENSG00000238088OFD1P7Y0lossY21010150210291661
ENSG00000249501USP9YP20lossY2093816520941313-1
ENSG00000236429GPM6BP20lossY2090372920903872-1
ENSG000002524391no signalY20444739204448331
ENSG00000236599TCEB1P261no signalY2034081820341146-1
ENSG00000231311PRYP21no signalY20323252203383701
ENSG00000230412TCEB1P120lossY20230369202306961
ENSG00000224485USP9YP71no signalY20020635200226861
ENSG00000224964TRAPPC2P31no signalY1990986319912576-1
ENSG00000223555USP9YP231no signalY19894090198966951
ENSG000002508681no signalY1988086219889280-1
ENSG00000229129ACTG1P21no signalY1986888119870005-1
ENSG00000226449CDY5P1no signalY19833478198350571
ENSG000002526890lossY1825012818250259-1
ENSG00000227166STSP10lossY17659096177052111
ENSG00000226011OFD1P1Y1no signalY19921687199372091
ENSG00000252513RNU1-128P1no signalY1990088319901042-1
ENSG00000224166PRYP11no signalY1984140819856476-1
ENSG00000226353TAF9P11no signalY19740393197412821
ENSG00000238191CLUHP11no signalY1973313919737712-1
ENSG00000224989FAM41AY10lossY19612838196268981
ENSG00000228518SURF6P10lossY19304706193055321
ENSG00000252323RNU6-184P0lossY1844816318448269-1
ENSG00000252173RNU6-109P0lossY18360815183609211
ENSG00000228787NLGN4Y-AS10lossY1690552216915913-1
ENSG00000129864VCY0lossY1609765216098393-1
ENSG00000154620TMSB4Y0lossY15815447158179041
ENSG00000215414PSMA6P10lossY15398518153992581
ENSG00000067048DDX3Y0lossY15016019150323901
ENSG00000114374USP9Y0lossY14813160149727641
ENSG00000234385RCC2P10lossY1390175813903233-1
ENSG000002713652no signalY1326274113262939-1
ENSG000002519662no signalY10033981100340931
ENSG00000226061PCMTD1P12no signalY10011462100118161
ENSG000002314112no signalY1000919910010334-1
ENSG00000252289RNA5SP5192no signalY99304849930602-1
ENSG00000239225TTTY230lossY974840797495711
ENSG00000231874TSPY18P0lossY970727397083901
ENSG00000212855TTTY22no signalY957819395960851
ENSG000002326170lossY950283895066191
ENSG00000236786TSPY15P0lossY938571793882901
ENSG000002255160lossY92930129344176-1
ENSG00000225560FAM197Y80lossY91851209193010-1
ENSG00000197038RBMY1A3P0lossY91487399160483-1
ENSG00000232235CDY3P0lossY90036949005311-1
ENSG00000232419TTTY190lossY857251385733241
ENSG00000232348LINC002790lossY850633585128831
ENSG00000216824ZNF736P10Y0lossY82868328287941-1
ENSG00000224634ZNF736P6Y0lossY821897282201841
ENSG00000239893ZNF736P9Y0lossY79369377938764-1
ENSG00000241200ZNF736P7Y0lossY78590287859847-1
ENSG00000229745BPY2DP0lossY78010387805681-1
ENSG00000225520TTTY160lossY75673987569288-1
ENSG00000252472RNU6-521P0lossY72910957291199-1
ENSG00000237701ATP5JP10lossY676879467694131
ENSG00000099721AMELY0lossY67339596742068-1
ENSG00000129816TTTY1B1no signalY625847262796051
ENSG00000234830FAM197Y90lossY61243086131994-1
ENSG000002350941no signalY617408361759611
ENSG000002512750lossY61098096111670-1
ENSG00000235175RPL26P370lossY56613415661778-1
ENSG000002518790lossY574228757423791
ENSG00000214207KRT18P101no signalY544118654424721
ENSG00000099715PCDH11Y0lossY486826756102651
ENSG000002184101no signalY37192653720910-1
ENSG00000176679TGIF2LY0lossY344708234480821
ENSG00000223600EEF1A1P410lossY28631082863314-1
ENSG00000229163NAP1L1P20lossY27970422799161-1
ENSG000002517960lossY28393531283936681
ENSG00000230854USP9YP200lossY28069535280759731
ENSG00000223655RAB9AP30lossY2806447028065042-1
ENSG00000229343CDY22P0lossY27959160279607131
ENSG00000225326USP9YP190lossY2789474327896353-1
ENSG00000232614USP9YP90lossY2787615827881307-1
ENSG00000172294CSPG4P4Y1no signalY27624416276328521
ENSG000002720421no signalY27605054276053291
ENSG00000172297GOLGA2P3Y1no signalY27600708276067191
ENSG00000223636UBE2Q2P5Y1no signalY27577303275834621
ENSG00000233652CICP11no signalY27535139275379581
ENSG00000183795BPY2B1no signalY26753707267853541
ENSG00000235412TTTY4B1no signalY26716349267531721
ENSG00000225491UBE2Q2P4Y1no signalY2637897326385131-1
ENSG00000242425RN7SL818P1no signalY2635710726357382-1
ENSG00000242854DNM1P241no signalY2632546326329652-1
ENSG000002359811no signalY26288505263039901
ENSG00000231375CDY17P0lossY2619602526197634-1
ENSG00000232205CDY18P1no signalY26250254262521651
ENSG00000227871USP9YP120lossY2609207426098440-1
ENSG00000231026XKRYP40lossY2606338826063870-1
ENSG00000252681RNU1-97P1no signalY2588708925887252-1
ENSG00000232424USP9YP291no signalY2588640525892840-1
ENSG000002679351no signalY25847479258505921
ENSG000002366471no signalY25695956256975321
ENSG000002300731no signalY25669468256715161
ENSG000002519250lossY2556924625569383-1
ENSG00000205944DAZ20lossY25365594254375031
ENSG00000232764TRIM60P8Y0lossY25171741251728101
ENSG000002249170lossY2481676324819006-1
ENSG00000230476OFD1P9Y0lossY2472713624760228-1
ENSG00000230814USP9YP240lossY24674428246827861
ENSG000002350590lossY24585087246317391
ENSG00000243040RBMY2FP0lossY24455006244679721
ENSG00000131548TTTY6B1no signalY24291113242929781
ENSG00000169800RBMY1F0lossY2431468924329129-1
ENSG000002423932no signalY2367018523672356-1
ENSG000002297251no signalY24017478240196971
ENSG00000169811RBMY1HP2no signalY23655405236638541
ENSG00000169849TSPY14P0lossY23630044236325691
ENSG00000183146CYorf170lossY2354484023548246-1
ENSG00000229551GAPDHP170lossY23023223230242231
ENSG00000232522ZNF886P0lossY2216307122174090-1
ENSG00000185275CD24P42no signalY2115435321154595-1
ENSG00000237997RCC2P20lossY2214846122149738-1
ENSG00000217896ZNF839P12no signalY21147061211482841
ENSG00000238135USP9YP100lossY20987993209913731
ENSG00000233546PRYP50lossY20691244206915091
ENSG00000249634USP9YP50lossY2065280120656181-1
ENSG00000227494USP9YP141no signalY20642973206492861
ENSG00000226362FAM41AY21no signalY2055288020566932-1
ENSG00000252667RNA5SP5231no signalY2050992120510033-1
ENSG00000228945CLUHP21no signalY20442064204466471
ENSG00000237558CDY7P1no signalY20063469200653801
ENSG000002283790lossY965092496551221
ENSG00000226223TSPY16P0lossY94778589478325-1
ENSG00000230066FAM197Y30lossY93348969342768-1
ENSG00000237802FAM197Y60lossY92257319233636-1
ENSG00000228383FAM197Y70lossY92054129235047-1
ENSG00000231988OFD1P3Y0lossY889863589080291
ENSG00000233699TTTY180lossY85514118551919-1
ENSG00000234850MTND2P30lossY824028282407511
ENSG00000238073RBMY2HP0lossY75397847544065-1
ENSG00000252155RNU6-941P0lossY724671372468201
ENSG00000234583TSPY19P1no signalY61719986173115-1
ENSG00000233634GOT2P50lossY670574867062931
ENSG00000168757TSPY20lossY611426461170601
ENSG000002694641no signalY53066915312605-1
ENSG00000225878SERBP1P21no signalY46697264670889-1
ENSG00000237659RNASEH2CP10lossY265786826583691
ENSG00000252948RNU6-1314P0lossY28507136285072391
ENSG00000232914TRAPPC2P40lossY28050665280533971
ENSG00000223406XKRYP50lossY27898535278990171
ENSG00000223856RAB9AP20lossY2785605527859704-1
ENSG00000233944LINC00265-3P1no signalY2753930127540203-1
ENSG00000237823CDY19P0lossY2771026927712180-1
ENSG00000223641TTTY17C1no signalY2732979027330920-1
ENSG00000232585OFD1P12Y0lossY26118927261412281
ENSG00000223362CDY15P1no signalY2600166926003238-1
ENSG00000224866USP9YP251no signalY25880340258823961
ENSG00000228240TTTY17A0lossY24997731249988621
ENSG00000224873CDY13P0lossY2466682824667842-1
ENSG00000229553USP9YP171no signalY2419590224204260-1
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